STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY28787.1Cysteine desulfurase family protein, VC1184 subfamily. (405 aa)    
Predicted Functional Partners:
SDY57689.1
NifU homolog involved in Fe-S cluster formation.
  
 0.992
SDY69760.1
Endonuclease/Exonuclease/phosphatase family protein.
    
   0.920
SDY55614.1
Fe-S cluster assembly ATP-binding protein.
  
 0.916
SDY28159.1
Cysteine desulfuration protein SufE.
 0.906
SDY55540.1
Iron-regulated ABC transporter membrane component SufB.
 
 0.890
SDY55641.1
Fe-S cluster assembly protein SufD.
 
 0.885
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
    
  0.729
SDY28848.1
Hypothetical protein.
 
    0.661
SDY16805.1
Thioredoxin reductase (NADPH).
  
 
  0.645
SDY28806.1
Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family.
       0.613
Your Current Organism:
Lentibacter algarum
NCBI taxonomy Id: 576131
Other names: CGMCC 1.10234, L. algarum, LMG 24861, LMG:24861, Lentibacter algarum Li et al. 2012, alpha proteobacterium ZXM098, alpha proteobacterium ZXM100, strain ZXM100
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