STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY08994.1Phosphonoacetate hydrolase. (169 aa)    
Predicted Functional Partners:
SDY08974.1
Hypothetical protein.
       0.601
SDY12711.1
Sulfate permease, SulP family.
 
  
 0.570
SDY09012.1
Fumarylpyruvate hydrolase.
       0.553
SDY09036.1
feruloyl-CoA synthase.
       0.553
SDY10896.1
Arsenate reductase.
 
   
 0.537
SDY08953.1
Cytochrome b561.
  
    0.439
SDY08934.1
Transcriptional regulator, TraR/DksA family.
       0.411
Your Current Organism:
Lentibacter algarum
NCBI taxonomy Id: 576131
Other names: CGMCC 1.10234, L. algarum, LMG 24861, LMG:24861, Lentibacter algarum Li et al. 2012, alpha proteobacterium ZXM098, alpha proteobacterium ZXM100, strain ZXM100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.