STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY12391.1FAD/FMN-containing dehydrogenase. (471 aa)    
Predicted Functional Partners:
SDY12437.1
Predicted Zn-dependent peptidase; Belongs to the peptidase M16 family.
   
  0.857
SDY12455.1
Threonine synthase.
  
 
 0.819
SDY12476.1
Surfeit locus 1 family protein.
  
    0.781
SDY71470.1
Glycolate oxidase iron-sulfur subunit.
 
 0.780
SDY12414.1
Ribosomal-protein-alanine N-acetyltransferase.
       0.776
SDY18590.1
Glycerol-3-phosphate acyltransferase.
    
 0.711
SDY77593.1
Glutamate synthase (NADPH) large subunit.
    
 0.700
SDY19507.1
NAD-dependent formate dehydrogenase flavoprotein subunit.
   
   0.699
SDY71507.1
Glycolate oxidase FAD binding subunit.
  
 
0.695
SDY41283.1
Electron transfer flavoprotein alpha subunit apoprotein.
 
 
 0.693
Your Current Organism:
Lentibacter algarum
NCBI taxonomy Id: 576131
Other names: CGMCC 1.10234, L. algarum, LMG 24861, LMG:24861, Lentibacter algarum Li et al. 2012, alpha proteobacterium ZXM098, alpha proteobacterium ZXM100, strain ZXM100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.