STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY19406.1Capsular polysaccharide transport system ATP-binding protein. (219 aa)    
Predicted Functional Partners:
SDY73813.1
Capsular polysaccharide transport system permease protein.
 
 0.999
SDY19390.1
Capsular polysaccharide transport system permease protein.
 
 
 0.998
SDY80687.1
ABC-type polysaccharide/polyol phosphate export permease.
 
 0.998
SDY73791.1
Capsular polysaccharide transport system permease protein.
 
 0.997
SDY41834.1
Polysaccharide export outer membrane protein.
 
  
 0.980
SDY41808.1
Capsular polysaccharide export protein.
 
  
 0.979
SDY41849.1
Capsular polysaccharide export protein.
 
   
 0.818
SDY81064.1
comF family protein.
   
    0.813
SDY80579.1
Glycosyl transferase family 2.
 
  
 0.811
SDY76040.1
Sulfotransferase family protein.
 
  
 0.768
Your Current Organism:
Lentibacter algarum
NCBI taxonomy Id: 576131
Other names: CGMCC 1.10234, L. algarum, LMG 24861, LMG:24861, Lentibacter algarum Li et al. 2012, alpha proteobacterium ZXM098, alpha proteobacterium ZXM100, strain ZXM100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.