STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY24499.1Outer membrane protein TolC. (453 aa)    
Predicted Functional Partners:
SDY24546.1
Membrane fusion protein, adhesin transport system.
 
 0.984
SDY24514.1
ATP-binding cassette, subfamily C, LapB.
 
 
 0.965
SDY90304.1
RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.956
SDY82897.1
Membrane fusion protein, adhesin transport system.
 
 0.933
SDY23328.1
Membrane fusion protein, adhesin transport system.
 
 0.898
SDY11250.1
HlyD family secretion protein.
 
 0.883
SDY29162.1
Hypothetical protein.
  
 0.861
SDY15061.1
HlyD family secretion protein.
  
 0.861
SDY72735.1
HlyD family secretion protein.
  
 0.861
SDY82915.1
ATP-binding cassette, subfamily C, LapB.
 
 
 0.855
Your Current Organism:
Lentibacter algarum
NCBI taxonomy Id: 576131
Other names: CGMCC 1.10234, L. algarum, LMG 24861, LMG:24861, Lentibacter algarum Li et al. 2012, alpha proteobacterium ZXM098, alpha proteobacterium ZXM100, strain ZXM100
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