STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY42024.1Putative signal transducing protein. (73 aa)    
Predicted Functional Partners:
SDY42043.1
tRNA1(Val) A37 N6-methylase TrmN6; Belongs to the methyltransferase superfamily.
       0.820
SDY42010.1
Octaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
       0.680
SDY17884.1
TIGR02302 family protein.
 
     0.679
SDY42067.1
Hypothetical protein.
       0.658
rsmI
16S rRNA (cytidine1402-2'-O)-methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
    0.628
SDY86698.1
N-terminal double-transmembrane domain-containing protein.
  
     0.595
SDY18477.1
Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
   
   0.486
SDY23895.1
Poly(3-hydroxybutyrate) depolymerase.
   
    0.485
SDY86713.1
Hypothetical protein.
  
     0.456
SDY09777.1
Hypothetical protein.
  
     0.451
Your Current Organism:
Lentibacter algarum
NCBI taxonomy Id: 576131
Other names: CGMCC 1.10234, L. algarum, LMG 24861, LMG:24861, Lentibacter algarum Li et al. 2012, alpha proteobacterium ZXM098, alpha proteobacterium ZXM100, strain ZXM100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.