STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY47222.1D-lactate dehydrogenase (cytochrome). (458 aa)    
Predicted Functional Partners:
SDY71470.1
Glycolate oxidase iron-sulfur subunit.
 
 0.861
SDY71507.1
Glycolate oxidase FAD binding subunit.
  
 
0.749
SDY18590.1
Glycerol-3-phosphate acyltransferase.
    
 0.711
SDY77593.1
Glutamate synthase (NADPH) large subunit.
    
 0.700
SDY19507.1
NAD-dependent formate dehydrogenase flavoprotein subunit.
   
   0.699
SDY21570.1
Branched-chain alpha-keto acid dehydrogenase E1 component.
    
 0.688
SDY21404.1
L-lactate dehydrogenase (cytochrome).
 
  0.659
SDY22768.1
L-lactate dehydrogenase (cytochrome).
 
  0.659
SDY87571.1
L-lactate dehydrogenase (cytochrome).
 
  0.659
SDY41283.1
Electron transfer flavoprotein alpha subunit apoprotein.
  
 
 0.625
Your Current Organism:
Lentibacter algarum
NCBI taxonomy Id: 576131
Other names: CGMCC 1.10234, L. algarum, LMG 24861, LMG:24861, Lentibacter algarum Li et al. 2012, alpha proteobacterium ZXM098, alpha proteobacterium ZXM100, strain ZXM100
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