STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY49267.1Protein of unknown function. (137 aa)    
Predicted Functional Partners:
SDY49250.1
Head-tail adaptor.
 
 
   0.999
SDY49286.1
Phage major tail protein, TP901-1 family.
 
 
   0.999
SDY49229.1
Phage conserved hypothetical protein, phiE125 gp8 family.
 
 
   0.997
SDY49375.1
TIGR02217 family protein.
 
   0.997
SDY49387.1
Phage conserved hypothetical protein BR0599.
 
 
   0.996
SDY49437.1
Putative phage tail protein.
 
 
   0.996
SDY49208.1
Phage major capsid protein, HK97 family.
 
 
   0.995
SDY49140.1
Phage portal protein, HK97 family.
 
 
   0.993
SDY49346.1
Phage tail tape measure protein, lambda family.
 
    0.947
SDY49308.1
Phage tail tube protein, GTA-gp10.
 
     0.943
Your Current Organism:
Lentibacter algarum
NCBI taxonomy Id: 576131
Other names: CGMCC 1.10234, L. algarum, LMG 24861, LMG:24861, Lentibacter algarum Li et al. 2012, alpha proteobacterium ZXM098, alpha proteobacterium ZXM100, strain ZXM100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.