STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY55641.1Fe-S cluster assembly protein SufD. (428 aa)    
Predicted Functional Partners:
SDY55540.1
Iron-regulated ABC transporter membrane component SufB.
 
0.999
SDY55614.1
Fe-S cluster assembly ATP-binding protein.
 
 0.999
SDY55705.1
Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 0.998
SDY52182.1
FeS assembly SUF system protein.
   
 0.921
SDY57689.1
NifU homolog involved in Fe-S cluster formation.
  
  
 0.911
SDY55662.1
Hypothetical protein.
     
 0.888
SDY28159.1
Cysteine desulfuration protein SufE.
 
 
 0.887
SDY28787.1
Cysteine desulfurase family protein, VC1184 subfamily.
 
 0.885
SDY55687.1
Yip1 domain-containing protein.
     
 0.883
SDY66383.1
Selenocysteine lyase/Cysteine desulfurase.
  
 
 0.859
Your Current Organism:
Lentibacter algarum
NCBI taxonomy Id: 576131
Other names: CGMCC 1.10234, L. algarum, LMG 24861, LMG:24861, Lentibacter algarum Li et al. 2012, alpha proteobacterium ZXM098, alpha proteobacterium ZXM100, strain ZXM100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.