STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY67704.1Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (444 aa)    
Predicted Functional Partners:
SDY67741.1
Acetyltransferase (GNAT) family protein.
 
  
  0.847
SDY67684.1
Putative spermidine/putrescine transport system ATP-binding protein/spermidine/putrescine transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
     0.846
SDY67757.1
Acetoin utilization deacetylase AcuC.
 
     0.810
SDY67588.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
     0.803
SDY24139.1
aromatic-L-amino-acid decarboxylase.
 
   
  0.786
SDY67721.1
Uncharacterized conserved protein, DUF849 family.
 
     0.786
SDY67666.1
Spermidine/putrescine transport system substrate-binding protein.
 
     0.771
SDY67773.1
D-arginine dehydrogenase.
       0.723
SDY49519.1
5-aminolevulinate synthase.
 
 
 0.635
kbl
2-amino-3-ketobutyrate coenzyme A ligase; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA.
 
 
 0.625
Your Current Organism:
Lentibacter algarum
NCBI taxonomy Id: 576131
Other names: CGMCC 1.10234, L. algarum, LMG 24861, LMG:24861, Lentibacter algarum Li et al. 2012, alpha proteobacterium ZXM098, alpha proteobacterium ZXM100, strain ZXM100
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