STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY71905.1Dimethylglycine dehydrogenase; Belongs to the GcvT family. (797 aa)    
Predicted Functional Partners:
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
 0.996
SDY13274.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
 
0.977
SDY24739.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
 
0.977
SDY30599.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
 
0.976
SDY24716.1
Sarcosine oxidase subunit delta.
 
 0.975
SDY13255.1
Sarcosine oxidase subunit delta.
 
 0.972
SDY30578.1
Sarcosine oxidase subunit delta.
  
 0.965
SDY30613.1
Sarcosine oxidase subunit gamma.
  
 0.961
SDY13294.1
Sarcosine oxidase subunit gamma.
  
 0.961
SDY24759.1
Sarcosine oxidase subunit gamma.
  
 0.961
Your Current Organism:
Lentibacter algarum
NCBI taxonomy Id: 576131
Other names: CGMCC 1.10234, L. algarum, LMG 24861, LMG:24861, Lentibacter algarum Li et al. 2012, alpha proteobacterium ZXM098, alpha proteobacterium ZXM100, strain ZXM100
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