STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY76395.1Hypothetical protein. (393 aa)    
Predicted Functional Partners:
SDY76418.1
uroporphyrinogen-III synthase.
 
     0.894
SDY76377.1
HemY protein.
 
   
 0.889
SDY22357.1
Hypothetical protein.
  
     0.747
SDY47433.1
Protein of unknown function.
  
     0.699
SDY14832.1
OmpA-OmpF porin, OOP family.
  
     0.668
SDY26961.1
Flagellar motor switch protein FliM.
  
     0.660
SDY43247.1
Uncharacterized conserved protein.
  
     0.631
SDY53692.1
Hypothetical protein.
  
     0.622
SDY54347.1
Periplasmic chaperone for outer membrane proteins Skp.
  
     0.621
SDY51883.1
Hypothetical protein.
  
     0.590
Your Current Organism:
Lentibacter algarum
NCBI taxonomy Id: 576131
Other names: CGMCC 1.10234, L. algarum, LMG 24861, LMG:24861, Lentibacter algarum Li et al. 2012, alpha proteobacterium ZXM098, alpha proteobacterium ZXM100, strain ZXM100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.