STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY85323.1Putative membrane protein. (106 aa)    
Predicted Functional Partners:
SDY85306.1
Signal transduction histidine kinase.
 
     0.928
SDY85287.1
Two-component system, OmpR family, response regulator.
 
     0.876
SDY85271.1
EF hand.
 
     0.873
SDY85422.1
Cytochrome c-type biogenesis protein CcmH.
 
     0.822
SDY85234.1
Rhodanese-related sulfurtransferase.
 
     0.658
SDY85354.1
Cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE.
 
     0.637
SDY85254.1
Uncharacterized conserved protein, DUF302 family.
 
     0.604
SDY85492.1
Suppressor for copper-sensitivity B.
 
     0.593
SDY85433.1
Hypothetical protein.
 
     0.591
SDY85339.1
Cytochrome c-type biogenesis protein CcmF.
       0.570
Your Current Organism:
Lentibacter algarum
NCBI taxonomy Id: 576131
Other names: CGMCC 1.10234, L. algarum, LMG 24861, LMG:24861, Lentibacter algarum Li et al. 2012, alpha proteobacterium ZXM098, alpha proteobacterium ZXM100, strain ZXM100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.