STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PAC_01167Uncharacterized protein. (184 aa)    
Predicted Functional Partners:
PAC_11036
Probable pre-mRNA splicing factor srp2.
    
 0.922
PAC_13382
Related to myb-related protein cdc5.
    
   0.846
PAC_00411
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
    
 
 0.725
PAC_06898
Probable RNA splicing factor Pad-1.
    
 
 0.614
PAC_10385
Related to mRNA splicing factor.
    
 0.593
PAC_06985
Related to U1 small nuclear ribonucleoprotein.
    
 0.585
PAC_13572
RRM domain-containing protein.
    
 0.545
PAC_03311
Related to putative dual specificity protein kinase pom1.
    
 0.482
PAC_09104
Related to ser/thr protein kinase.
    
 0.482
PAC_16129
Related to branch point bridging protein (MSL5).
    
 
 0.468
Your Current Organism:
Phialocephala subalpina
NCBI taxonomy Id: 576137
Other names: P. subalpina
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.