STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PAC_13864Uncharacterized protein. (1544 aa)    
Predicted Functional Partners:
PAC_10676
Related to iron-dependent peroxidase.
    
  0.660
PAC_02909
Related to pheromone receptor.
    
 0.601
PAC_19891
Related to SGF73-SAGA associated factor.
    
 0.485
PAC_13343
SUN domain-containing protein.
    
 0.478
PAC_11999
Related to transcription factor spt3.
    
  0.472
PAC_13420
Related to transcription factor spt3.
    
  0.472
PAC_19457
Related to the component Tra1 of the SAGA complex; Belongs to the PI3/PI4-kinase family.
    
 0.472
PAC_07548
Related to general RNA polymerase II transcription factor TAF12.
    
 0.464
PAC_02036
Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]
    
  0.462
PAC_17203
Probable transcription initiation factor TFIID subunit 5.
    
 0.458
Your Current Organism:
Phialocephala subalpina
NCBI taxonomy Id: 576137
Other names: P. subalpina
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