D2UXM3_NAEGR protein (Naegleria gruberi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D2UXM3_NAEGR

Uncharacterized protein. (457 aa)

Predicted Functional Partners:

D2VEN7_NAEGR

0.554

D2VE31_NAEGR

0.531

D2VEY7_NAEGR

0.463

D2W3Y6_NAEGR

0.430

Your Current Organism:

Naegleria gruberi

NCBI taxonomy Id: 5762
Other names: N. gruberi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D2UXM3_NAEGR	D2VE31_NAEGR	D2UXM3	D2VE31	Uncharacterized protein.	IFT140.	0.531
D2UXM3_NAEGR	D2VEN7_NAEGR	D2UXM3	D2VEN7	Uncharacterized protein.	Predicted protein.	0.554
D2UXM3_NAEGR	D2VEY7_NAEGR	D2UXM3	D2VEY7	Uncharacterized protein.	Predicted protein.	0.463
D2UXM3_NAEGR	D2W3Y6_NAEGR	D2UXM3	D2W3Y6	Uncharacterized protein.	Predicted protein.	0.430
D2VE31_NAEGR	D2UXM3_NAEGR	D2VE31	D2UXM3	IFT140.	Uncharacterized protein.	0.531
D2VE31_NAEGR	D2VEY7_NAEGR	D2VE31	D2VEY7	IFT140.	Predicted protein.	0.520
D2VEN7_NAEGR	D2UXM3_NAEGR	D2VEN7	D2UXM3	Predicted protein.	Uncharacterized protein.	0.554
D2VEN7_NAEGR	D2W3Y6_NAEGR	D2VEN7	D2W3Y6	Predicted protein.	Predicted protein.	0.565
D2VEY7_NAEGR	D2UXM3_NAEGR	D2VEY7	D2UXM3	Predicted protein.	Uncharacterized protein.	0.463
D2VEY7_NAEGR	D2VE31_NAEGR	D2VEY7	D2VE31	Predicted protein.	IFT140.	0.520
D2W3Y6_NAEGR	D2UXM3_NAEGR	D2W3Y6	D2UXM3	Predicted protein.	Uncharacterized protein.	0.430
D2W3Y6_NAEGR	D2VEN7_NAEGR	D2W3Y6	D2VEN7	Predicted protein.	Predicted protein.	0.565