STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D2V0F5_NAEGRtRNA pseudouridine synthase. (377 aa)    
Predicted Functional Partners:
D2UY04_NAEGR
Predicted protein; Belongs to the bacterial ribosomal protein bL17 family.
  
  
 0.748
D2UXC7_NAEGR
Predicted protein.
  
  
 0.683
D2W3Y1_NAEGR
Predicted protein.
  
  
 0.683
D2VC43_NAEGR
Predicted protein.
  
 0.670
D2VIZ9_NAEGR
Predicted protein.
  
 0.670
D2VFH6_NAEGR
Predicted protein.
   
 
 0.642
D2V5U8_NAEGR
tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.
   
 
 0.634
D2W1P4_NAEGR
Predicted protein.
   
  
 0.630
D2V1L2_NAEGR
Predicted protein.
   
 
 0.610
D2V9Q6_NAEGR
tRNA pseudouridine synthase family protein.
   
 
 0.596
Your Current Organism:
Naegleria gruberi
NCBI taxonomy Id: 5762
Other names: N. gruberi
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