APC00831.1 protein (Polynucleobacter asymbioticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

APC00831.1

Cyclic nucleotide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (205 aa)

Predicted Functional Partners:

APC00836.1

0.546

APC00832.1

0.544

APC01994.1

0.529

APC00244.1

0.441

APC00927.1

0.435

Your Current Organism:

Polynucleobacter asymbioticus

NCBI taxonomy Id: 576611
Other names: Burkholderiaceae bacterium KF022, Burkholderiaceae bacterium KF023, Burkholderiaceae bacterium KF032, Burkholderiaceae bacterium KF040, Burkholderiaceae bacterium KF041, Burkholderiaceae bacterium KF042, Burkholderiaceae bacterium KF043, Burkholderiaceae bacterium KF046, Burkholderiaceae bacterium KF047, Burkholderiaceae bacterium KF069, Burkholderiaceae bacterium KF071, Burkholderiaceae bacterium KF072, CIP 109841, DSM 18221, P. asymbioticus, Polynucleobacter asymbioticus (Hahn et al. 2009) Hahn et al. 2016, Polynucleobacter necessarius subsp. asymbioticus, Polynucleobacter necessarius subsp. asymbioticus Hahn et al. 2009, Polynucleobacter sp. INAWF005, Polynucleobacter sp. INAWF006, Polynucleobacter sp. INAWF008, Polynucleobacter sp. INAWF009, Polynucleobacter sp. INAWF010, Polynucleobacter sp. INAWF011, Polynucleobacter sp. INAWF012, Polynucleobacter sp. INBF001, Polynucleobacter sp. MWH-Creno-4A3, Polynucleobacter sp. MWH-Creno-4D65, Polynucleobacter sp. MWH-Mekk-C4, Polynucleobacter sp. MWH-Mekk-D4, Polynucleobacter sp. MWH-NZ4W7a, Polynucleobacter sp. MWH-P1sevC1, Polynucleobacter sp. P1-KOL8, Polynucleobacter sp. QLW-P1DMWA-2, Polynucleobacter sp. QLW-P1DNSYA-1, Polynucleobacter sp. QLW-P1DNSYA-2, Polynucleobacter sp. QLW-P1FAT50D-2, Polynucleobacter sp. QLW-P1FMW50A-1, Polynucleobacter sp. QLW-P1FNSY20A-6, Polynucleobacter sp. SHIRF001, Polynucleobacter sp. SHIRF002, Polynucleobacter sp. SHIRF003, Polynucleobacter sp. SHIRF004, Polynucleobacter sp. SHIRF005, Polynucleobacter sp. SHIRF006, Polynucleobacter sp. SHIRF007, Polynucleobacter sp. SHIRF008, Polynucleobacter sp. SHIRF009, Polynucleobacter sp. SHIRF010, Polynucleobacter sp. SHIRF011, Polynucleobacter sp. SHIRF012, Polynucleobacter sp. SHIRF013, Polynucleobacter sp. SHIRF014, Polynucleobacter sp. SHIRF015, Polynucleobacter sp. SHIRF016, Polynucleobacter sp. SHIRF017, Polynucleobacter sp. SHIRF018, Polynucleobacter sp. SHIRF019, Polynucleobacter sp. SUWAF015, Polynucleobacter sp. SUWAF016, Polynucleobacter sp. TEGAF008, Polynucleobacter sp. TEGF001, Polynucleobacter sp. UF003, Polynucleobacter sp. UF009, Polynucleobacter sp. USHIF002, Polynucleobacter sp. USHIF003, Polynucleobacter sp. USHIF004, Polynucleobacter sp. USHIF007, Polynucleobacter sp. USHIF009, Polynucleobacter sp. USHIF010, Polynucleobacter sp. USHIF011, Polynucleobacter sp. USHIF012, beta proteobacterium MWH-HuK1, beta proteobacterium MWH-T1W11, strain QLW-P1DMWA-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APC00244.1	APC00831.1	AOC25_00695	AOC25_03895	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cyclic nucleotide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.441
APC00244.1	APC00832.1	AOC25_00695	AOC25_03900	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	oxalyl-CoA decarboxylase; Catalyzes the formation of formyl-CoA from oxalyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TPP enzyme family.	0.560
APC00244.1	APC01994.1	AOC25_00695	AOC25_10390	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.508
APC00831.1	APC00244.1	AOC25_03895	AOC25_00695	Cyclic nucleotide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.441
APC00831.1	APC00832.1	AOC25_03895	AOC25_03900	Cyclic nucleotide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	oxalyl-CoA decarboxylase; Catalyzes the formation of formyl-CoA from oxalyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TPP enzyme family.	0.544
APC00831.1	APC00836.1	AOC25_03895	AOC25_03920	Cyclic nucleotide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	methionyl-tRNA formyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.546
APC00831.1	APC00927.1	AOC25_03895	AOC25_04435	Cyclic nucleotide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.435
APC00831.1	APC01994.1	AOC25_03895	AOC25_10390	Cyclic nucleotide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.529
APC00832.1	APC00244.1	AOC25_03900	AOC25_00695	oxalyl-CoA decarboxylase; Catalyzes the formation of formyl-CoA from oxalyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TPP enzyme family.	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.560
APC00832.1	APC00831.1	AOC25_03900	AOC25_03895	oxalyl-CoA decarboxylase; Catalyzes the formation of formyl-CoA from oxalyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TPP enzyme family.	Cyclic nucleotide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.544
APC00832.1	APC00836.1	AOC25_03900	AOC25_03920	oxalyl-CoA decarboxylase; Catalyzes the formation of formyl-CoA from oxalyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TPP enzyme family.	methionyl-tRNA formyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.600
APC00836.1	APC00831.1	AOC25_03920	AOC25_03895	methionyl-tRNA formyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cyclic nucleotide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.546
APC00836.1	APC00832.1	AOC25_03920	AOC25_03900	methionyl-tRNA formyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	oxalyl-CoA decarboxylase; Catalyzes the formation of formyl-CoA from oxalyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TPP enzyme family.	0.600
APC00927.1	APC00831.1	AOC25_04435	AOC25_03895	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cyclic nucleotide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.435
APC00927.1	APC01994.1	AOC25_04435	AOC25_10390	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.970
APC01994.1	APC00244.1	AOC25_10390	AOC25_00695	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.508
APC01994.1	APC00831.1	AOC25_10390	AOC25_03895	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cyclic nucleotide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.529
APC01994.1	APC00927.1	AOC25_10390	AOC25_04435	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.970

Server load: low (16%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2023

Credits

Access

Info

About