STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD98520.1propionyl-CoA carboxylase beta chain. (511 aa)    
Predicted Functional Partners:
SDE17673.1
acetyl-CoA carboxylase, biotin carboxylase subunit; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
 
 0.996
SDD98450.1
Biotin carboxyl carrier protein.
 
 0.995
SDE54953.1
Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
 
 0.982
SDE60539.1
Polyketide-type polyunsaturated fatty acid synthase PfaA.
  
 0.957
SDE65821.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
 
 0.957
birA
Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
 
 
 0.950
SDE41425.1
Carbamoyl-phosphate synthase L chain, ATP binding domain.
  
 0.945
SDE06906.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
 0.941
SDE41491.1
methylmalonyl-CoA epimerase.
 
 
 0.920
SDE22482.1
Acyl-CoA dehydrogenase.
 
 0.897
Your Current Organism:
Desulfuromonas thiophila
NCBI taxonomy Id: 57664
Other names: D. thiophila, DSM 8987, strain NZ27
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