STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE09371.1alpha-L-glutamate ligase-related protein. (320 aa)    
Predicted Functional Partners:
SDE09343.1
Inactive transglutaminase fused to 7 transmembrane helices.
  
 0.974
SDE09314.1
Uncharacterized conserved protein.
 
     0.952
SDE02332.1
Glutamate synthase (ferredoxin).
    
 0.821
SDE09248.1
methionine-R-sulfoxide reductase.
  
  
 0.688
SDD82999.1
Methyltransferase domain-containing protein.
  
     0.647
SDE68267.1
Mur ligase middle domain-containing protein.
 
  
 0.604
SDE68291.1
Cyanophycin synthetase.
    
 0.549
SDE09283.1
Membrane-bound lytic murein transglycosylase A.
       0.516
argB
N-acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.
    
 0.506
secD
Preprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
    
 0.503
Your Current Organism:
Desulfuromonas thiophila
NCBI taxonomy Id: 57664
Other names: D. thiophila, DSM 8987, strain NZ27
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