STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hpfPutative sigma-54 modulation protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. (182 aa)    
Predicted Functional Partners:
rpsU
SSU ribosomal protein S21P; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.929
rpmC
LSU ribosomal protein L29P; Belongs to the universal ribosomal protein uL29 family.
  
 
 
 0.928
rpmA
LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.919
rpsI
SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.918
rplI
LSU ribosomal protein L9P; Binds to the 23S rRNA.
  
   0.915
rplJ
LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
  
 
   0.913
rpsE
SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
    
 
 0.912
rplO
LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
    
 
 0.912
rpsP
SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family.
    
 
 0.912
rpmB
LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family.
   
   0.912
Your Current Organism:
Desulfuromonas thiophila
NCBI taxonomy Id: 57664
Other names: D. thiophila, DSM 8987, strain NZ27
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.