STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE44891.1Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family. (111 aa)    
Predicted Functional Partners:
SDE44862.1
Serine/threonine-protein kinase RsbW.
 
 0.997
SDD91254.1
Signal transduction histidine kinase.
  
 
 0.971
SDE44922.1
Serine phosphatase.
 
 0.957
SDE63838.1
Signal transduction histidine kinase.
 
 
 0.954
SDD70063.1
Serine phosphatase RsbU, regulator of sigma subunit.
 
 0.948
SDE25888.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 
 0.942
SDE32534.1
sigma-B regulation protein RsbU (phosphoserine phosphatase).
 
 0.933
SDE07602.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
  
  0.891
flgH
Flagellar L-ring protein precursor FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
   
    0.890
SDE27597.1
Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
   
    0.886
Your Current Organism:
Desulfuromonas thiophila
NCBI taxonomy Id: 57664
Other names: D. thiophila, DSM 8987, strain NZ27
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