STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE65396.1Glyoxylase, beta-lactamase superfamily II. (329 aa)    
Predicted Functional Partners:
SDE63058.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
 
 0.962
SDE60539.1
Polyketide-type polyunsaturated fatty acid synthase PfaA.
   
 0.783
SDE65356.1
Hypothetical protein.
       0.773
SDE65821.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
   
 
 0.629
SDD96861.1
Hypothetical protein.
  
 0.590
SDE47093.1
Rhodanese-related sulfurtransferase.
  
 0.590
SDE65030.1
Protein tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
   
   0.531
SDE65067.1
Small redox-active disulfide protein 2.
   
 0.528
ybeY
Probable rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
   
 
 0.505
truA
tRNA pseudouridine38-40 synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
   
 
 0.495
Your Current Organism:
Desulfuromonas thiophila
NCBI taxonomy Id: 57664
Other names: D. thiophila, DSM 8987, strain NZ27
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