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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB90600.1Probable F420-dependent oxidoreductase, Rv1855c family. (328 aa)    
Predicted Functional Partners:
SEB32108.1
Transglutaminase-like superfamily protein.
  
  
 0.771
SEC71026.1
Transglutaminase-like superfamily protein.
  
  
 0.771
SED22363.1
Deazaflavin-dependent oxidoreductase, nitroreductase family.
  
   
 0.758
SED48698.1
Probable F420-dependent oxidoreductase, Rv3520c family.
  
     0.695
SEC18430.1
Deazaflavin-dependent oxidoreductase, nitroreductase family.
  
     0.663
SEC56655.1
Deazaflavin-dependent oxidoreductase, nitroreductase family.
  
   
 0.634
SEC86969.1
Deazaflavin-dependent oxidoreductase, nitroreductase family.
  
     0.627
SEC91696.1
Deazaflavin-dependent oxidoreductase, nitroreductase family.
  
   
 0.623
SED27921.1
Deazaflavin-dependent oxidoreductase, nitroreductase family.
  
   
 0.584
SEB90534.1
Alkylated DNA repair dioxygenase AlkB.
       0.568
Your Current Organism:
Tsukamurella tyrosinosolvens
NCBI taxonomy Id: 57704
Other names: CCUG 38499, CIP 106771, DSM 44234, JCM 10112, JCM 15482 [[Tsukamurella carboxydivorans]], KCCM 42885 [[Tsukamurella carboxydivorans]], NCTC 13231, T. tyrosinosolvens, Tsukamurella carboxydivorans, Tsukamurella carboxydivorans Park et al. 2009, Tsukamurella sp. MH1, Tsukamurella sp. Y2, Tsukamurella tyrosinisolvens, strain Y2 [[Tsukamurella carboxydivorans]]
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