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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC31771.1Catechol 2,3-dioxygenase. (236 aa)    
Predicted Functional Partners:
SEC31902.1
Hypothetical protein.
 
     0.946
maiA
Maleate isomerase; Catalyzes cis-trans isomerization of the C2-C3 double bond in maleate to yield fumarate.
 
     0.916
SEC31859.1
Hypothetical protein.
       0.818
SEC31945.1
Uncharacterized conserved protein.
       0.773
SEC31987.1
RNA polymerase sigma-70 factor, ECF subfamily.
       0.773
SEC31549.1
anthraniloyl-CoA monooxygenase.
 
   
 0.669
SEC31619.1
DNA-binding transcriptional regulator, AcrR family.
 
     0.640
SED25862.1
Methyltransferase domain-containing protein.
 
  
 0.539
SEC32028.1
Activator of Hsp90 ATPase homolog 1-like protein.
       0.518
SEC94782.1
Membrane associated serine protease, rhomboid family.
   
  
 0.506
Your Current Organism:
Tsukamurella tyrosinosolvens
NCBI taxonomy Id: 57704
Other names: CCUG 38499, CIP 106771, DSM 44234, JCM 10112, JCM 15482 [[Tsukamurella carboxydivorans]], KCCM 42885 [[Tsukamurella carboxydivorans]], NCTC 13231, T. tyrosinosolvens, Tsukamurella carboxydivorans, Tsukamurella carboxydivorans Park et al. 2009, Tsukamurella sp. MH1, Tsukamurella sp. Y2, Tsukamurella tyrosinisolvens, strain Y2 [[Tsukamurella carboxydivorans]]
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