STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC92339.1DNA-binding transcriptional regulator, AcrR family. (198 aa)    
Predicted Functional Partners:
SEC92373.1
Predicted metal-dependent hydrolase.
 
     0.899
SED46625.1
SnoaL-like domain-containing protein.
  
     0.765
SED38435.1
Hypothetical protein.
  
     0.749
SED38511.1
Sulfotransferase family protein.
  
 
 
 0.748
SEC00166.1
Limonene-1,2-epoxide hydrolase.
  
     0.685
SED51540.1
SnoaL-like domain-containing protein.
  
     0.671
SED52370.1
DNA-binding transcriptional regulator, AcrR family.
  
     0.671
SED38400.1
DNA-binding transcriptional regulator, IclR family.
  
     0.650
SEC12438.1
DNA-binding transcriptional regulator, AcrR family.
  
     0.626
SED51104.1
3-oxo-5alpha-steroid 4-dehydrogenase.
  
     0.588
Your Current Organism:
Tsukamurella tyrosinosolvens
NCBI taxonomy Id: 57704
Other names: CCUG 38499, CIP 106771, DSM 44234, JCM 10112, JCM 15482 [[Tsukamurella carboxydivorans]], KCCM 42885 [[Tsukamurella carboxydivorans]], NCTC 13231, T. tyrosinosolvens, Tsukamurella carboxydivorans, Tsukamurella carboxydivorans Park et al. 2009, Tsukamurella sp. MH1, Tsukamurella sp. Y2, Tsukamurella tyrosinisolvens, strain Y2 [[Tsukamurella carboxydivorans]]
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