STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADW16218.1Radical SAM domain protein; COGs: COG1242 Fe-S oxidoreductase; InterPro IPR006638: IPR007197; KEGG: gvi:glr2235 hypothetical protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Glr2235 protein; PFAM: Radical SAM superfamily; TIGRFAM: radical SAM protein, TIGR01212 family. (313 aa)    
Predicted Functional Partners:
ADW16221.1
Peptidase U32; COGs: COG0826 Collagenase and related protease; InterPro IPR001539; KEGG: dps:DP2953 protease; PFAM: peptidase U32; SPTR: Probable protease; PFAM: Peptidase family U32.
 
    0.685
ADW16219.1
COGs: COG2191 Formylmethanofuran dehydrogenase subunit E; InterPro IPR003814; KEGG: dak:DaAHT2_0551 formylmethanofuran dehydrogenase subunit E region; PFAM: formylmethanofuran dehydrogenase subunit E region; SPTR: Formylmethanofuran dehydrogenase subunit E region; PFAM: Prokaryotic dksA/traR C4-type zinc finger; FmdE, Molybdenum formylmethanofuran dehydrogenase operon.
       0.608
ADW16220.1
Putative protease; COGs: COG0826 Collagenase and related protease; KEGG: dat:HRM2_21100 putative protease; SPTR: Putative protease; PFAM: Peptidase family U32.
  
    0.537
ADW19138.1
Peptidase U32; COGs: COG0826 Collagenase and related protease; InterPro IPR001539; KEGG: dps:DP0623 proteinase (collagenase) precursor; PFAM: peptidase U32; SPTR: Probable proteinase (Collagenase); PFAM: Collagenase; Peptidase family U32.
 
    0.518
ADW19372.1
Radical SAM domain protein; COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006158: IPR007197: IPR006638; KEGG: dba:Dbac_1571 radical SAM domain protein; PFAM: Radical SAM domain protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein; PFAM: Radical SAM superfamily; B12 binding domain.
      0.413
Your Current Organism:
Desulfobulbus propionicus
NCBI taxonomy Id: 577650
Other names: D. propionicus DSM 2032, Desulfobulbus propionicus DSM 2032, Desulfobulbus propionicus str. DSM 2032, Desulfobulbus propionicus strain DSM 2032
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