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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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experimentally determined
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[Homology]
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ADW16244.13'-5' exonuclease; COGs: COG0349 Ribonuclease D; InterPro IPR002562; KEGG: dvl:Dvul_1912 3'-5' exonuclease; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease; SPTR: 3'-5' exonuclease domain protein; PFAM: 3'-5' exonuclease. (210 aa)    
Predicted Functional Partners:
ADW17003.1
RNAse PH; COGs: COG0689 RNase PH; InterPro IPR001247: IPR015847: IPR002381: IPR018336; KEGG: dps:DP1273 ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; PRIAM: tRNA nucleotidyltransferase; SPTR: Ribonuclease PH; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; TIGRFAM: ribonuclease PH.
   
 0.928
ADW17140.1
COGs: COG0557 Exoribonuclease R; InterPro IPR001900; KEGG: dak:DaAHT2_0510 exoribonuclease II; PFAM: ribonuclease II; SPTR: Exoribonuclease II; PFAM: RNB domain; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases.
   
 0.885
ADW18726.1
COGs: COG0557 Exoribonuclease R; InterProIPR011129: IPR011805: IPR004476: IPR003029: IPR 000771: IPR001900: IPR013223; KEGG: dak:DaAHT2_2608 ribonuclease R; PFAM: ribonuclease II; Ribonuclease B OB region domain; RNA binding S1 domain protein; SMART: Cold shock protein; SPTR: 3'-5' exoribonuclease, VacB and RNase II:Ribonuclease R; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonuclease; PFAM: Ribonuclease B OB domain; RNB domain; S1 RNA binding domain; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonucleases.
   
 0.885
ADW17154.1
COGs: COG0030 Dimethyladenosine transferase (rRNA methylation); InterPro IPR020598: IPR001737: IPR011530: IPR020596; KEGG: dak:DaAHT2_0616 dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; SMART: Ribosomal RNA adenine methylase transferase-like; SPTR: Dimethyladenosine transferase; TIGRFAM: dimethyladenosine transferase; PFAM: Ribosomal RNA adenine dimethylase; TIGRFAM: dimethyladenosine transferase.
   
 
 0.864
ADW16986.1
COGs: COG0522 Ribosomal protein S4 and related protein; InterPro IPR001912: IPR002942: IPR005709: IPR018079; KEGG: dps:DP1151 30S ribosomal protein S4; PFAM: ribosomal protein S4; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; SPTR: 30S ribosomal protein S4; TIGRFAM: ribosomal protein S4; PFAM: Ribosomal protein S4/S9 N-terminal domain; S4 domain; TIGRFAM: ribosomal protein S4, bacterial/organelle type.
   
  0.857
rpsK
SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
   
  0.849
ADW17100.1
Peptidylprolyl isomerase; COGs: COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; InterPro IPR002130: IPR001179: IPR020892; KEGG: dps:DP1645 peptidyl-prolyl cis-trans isomerase; PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; peptidylprolyl isomerase FKBP-type; PRIAM: Peptidylprolyl isomerase; SPTR: Probable peptidyl-prolyl cis-trans isomerase; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD.
  
 
 0.794
ADW16235.1
SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
   
 0.785
ADW18921.1
COGs: COG0539 Ribosomal protein S1; InterPro IPR003029: IPR000110; KEGG: pca:Pcar_2672 30S ribosomal protein S1; PFAM: RNA binding S1 domain protein; SPTR: SSU ribosomal protein S1P; PFAM: S1 RNA binding domain; TIGRFAM: ribosomal protein S1.
   
 0.785
rpsM
SSU ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.
    
   0.765
Your Current Organism:
Desulfobulbus propionicus
NCBI taxonomy Id: 577650
Other names: D. propionicus DSM 2032, Desulfobulbus propionicus DSM 2032, Desulfobulbus propionicus str. DSM 2032, Desulfobulbus propionicus strain DSM 2032
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