STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADW17054.1TraB family protein; COGs: COG1916 Uncharacterized homolog of PrgY (pheromone shutdown protein); InterPro IPR002816: IPR005230; KEGG: dps:DP1677 pheromone shutdown protein TraB; PFAM: TraB determinant protein; SPTR: Related to pheromone shutdown protein TraB; TIGRFAM: TraB family protein; PFAM: TraB family; TIGRFAM: pheromone shutdown-related protein TraB. (398 aa)    
Predicted Functional Partners:
ADW16539.1
KEGG: gbm:Gbem_1799 Fibronectin type III domain protein; SPTR: Fibronectin type III domain protein.
    
   0.730
secY
Protein translocase subunit secY/sec61 alpha; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
   0.730
ADW17053.1
Protein of unknown function UPF0044; COGs: COG1534 RNA-binding protein containing KH domain possibly ribosomal protein; InterPro IPR001890: IPR017924; KEGG: afw:Anae109_0283 hypothetical protein; PFAM: protein of unknown function UPF0044; SPTR: Putative uncharacterized protein; PFAM: CRS1 / YhbY (CRM) domain; TIGRFAM: putative RNA-binding protein, YhbY family.
 
     0.718
ADW17055.1
Male sterility domain protein; COGs: COG0702 nucleoside-diphosphate-sugar epimerase; KEGG: dak:DaAHT2_2622 male sterility domain protein; SPTR: Male sterility domain protein; PFAM: Protein of unknown function (DUF2867); NmrA-like family.
       0.550
ADW17056.1
COGs: COG0741 Soluble lytic murein transglycosylase and related regulatory protein (some contain LysM/invasin domains); InterPro IPR008258: IPR018392: IPR000189: IPR002482; KEGG: dak:DaAHT2_1690 lytic transglycosylase catalytic; PFAM: Lytic transglycosylase catalytic; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; SPTR: Lytic transglycosylase catalytic; PFAM: Transglycosylase SLT domain; LysM domain.
       0.405
Your Current Organism:
Desulfobulbus propionicus
NCBI taxonomy Id: 577650
Other names: D. propionicus DSM 2032, Desulfobulbus propionicus DSM 2032, Desulfobulbus propionicus str. DSM 2032, Desulfobulbus propionicus strain DSM 2032
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