Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADW17506.1Helix-turn-helix domain protein; InterPro IPR001387; KEGG: tte:TTE2174 transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Putative helix-turn-helix motif protein; manually curated; PFAM: Helix-turn-helix. (149 aa)    
Predicted Functional Partners:
ADW17507.1
KEGG: syg:sync_2014 signal peptidase I; SPTR: Signal peptidase I.
       0.718
ADW18138.1
InterPro IPR002477; KEGG: geo:Geob_3196 peptidoglycan-binding domain 1 protein; PFAM: Peptidoglycan-binding domain 1 protein; SPTR: Peptidoglycan-binding domain 1 protein; PFAM: Putative peptidoglycan binding domain.
  
     0.537
ADW17505.1
KEGG: dia:Dtpsy_0839 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.407
Your Current Organism:
Desulfobulbus propionicus
NCBI taxonomy Id: 577650
Other names: D. propionicus DSM 2032, Desulfobulbus propionicus DSM 2032, Desulfobulbus propionicus str. DSM 2032, Desulfobulbus propionicus strain DSM 2032
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