STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADW17530.1COGs: COG3357 transcriptional regulator protein; KEGG: sfu:Sfum_0245 transcriptional regulator; SPTR: Transcriptional regulator containing an HTH domain fused to a Zn-ribbon. (99 aa)    
Predicted Functional Partners:
ADW18293.1
InterPro IPR011576; KEGG: dat:HRM2_43000 hypothetical protein; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; SPTR: Putative uncharacterized protein; PFAM: Pyridoxamine 5'-phosphate oxidase.
  
     0.505
ADW17681.1
KEGG: dps:DP2152 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Pyridoxamine 5'-phosphate oxidase.
  
     0.473
ADW17531.1
Site-specific DNA-methyltransferase (adenine-specific); COGs: COG2189 Adenine specific DNA methylase Mod; InterPro IPR002941: IPR002295: IPR002052; KEGG: tbd:Tbd_2276 adenine specific DNA methylase; PFAM: DNA methylase N-4/N-6 domain protein; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: Putative uncharacterized protein; PFAM: DNA methylase.
       0.424
ADW17532.1
Type III restriction protein res subunit; COGs: COG1061 DNA or RNA helicase of superfamily II; InterPro IPR006935; KEGG: tbd:Tbd_2275 hypothetical protein; PFAM: type III restriction protein res subunit; SPTR: Putative uncharacterized protein; PFAM: Type III restriction enzyme, res subunit.
       0.419
ADW17759.1
Peptidase M15A; COGs: COG3108 conserved hypothetical protein; InterPro IPR013230; KEGG: sfu:Sfum_2869 hypothetical protein; PFAM: Peptidase M15A; SPTR: Putative uncharacterized protein; PFAM: Bacterial protein of unknown function (DUF882).
  
     0.407
ADW18442.1
Transcriptional regulator, XRE family; COGs: COG0467 RecA-superfamily ATPase implicated in signal transduction; InterPro IPR001387: IPR013096; KEGG: sfu:Sfum_4068 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein; SPTR: Transcriptional regulator, XRE family; PFAM: Cupin domain; Helix-turn-helix.
  
     0.400
Your Current Organism:
Desulfobulbus propionicus
NCBI taxonomy Id: 577650
Other names: D. propionicus DSM 2032, Desulfobulbus propionicus DSM 2032, Desulfobulbus propionicus str. DSM 2032, Desulfobulbus propionicus strain DSM 2032
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