STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
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Coexpression
Experiments
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[Homology]
Score
ADW18341.1Type II secretion system F domain protein; COGs: COG1459 Type II secretory pathway component PulF; InterPro IPR003004: IPR018076; KEGG: dps:DP2782 type 4 fimbrial assembly protein (PilC); PFAM: Type II secretion system F domain; SPTR: Probable type 4 fimbrial assembly protein (PilC); PFAM: Bacterial type II secretion system protein F domain. (401 aa)    
Predicted Functional Partners:
ADW16229.1
COGs: COG2804 Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterPro IPR001482: IPR007831; KEGG: dba:Dbac_2634 type II secretion system protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SPTR: Type II secretion system protein E; PFAM: Type II/IV secretion system protein; GSPII_E N-terminal domain.
 
 
 0.965
ADW16822.1
COGs: COG2804 Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterPro IPR007831: IPR001482: IPR003593; KEGG: dak:DaAHT2_2277 type II secretion system protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; SPTR: Type II secretion system protein E; PFAM: GSPII_E N-terminal domain; Type II/IV secretion system protein.
 
 
 0.965
ADW16842.1
Type II secretion system protein E (GspE); COGs: COG2804 Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterPro IPR007831: IPR001482: IPR013369: IPR003593; KEGG: dal:Dalk_5144 general secretory pathway protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; SPTR: General secretory pathway protein E; TIGRFAM: general secretory pathway protein E; PFAM: Type II/IV secretion system protein; GSPII_E N-terminal domain; TIGRFAM: general secretory pathway protein E.
 
 0.965
pilB
Cyclic nucleotide-binding protein; COGs: COG2804 Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterProIPR000595: IPR007831: IPR001482: IPR003593: IPR 013374; KEGG: dps:DP2226 type IV pilus assembly protein (TapB); PFAM: type II secretion system protein E; General secretory system II protein E domain protein; cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; AAA ATPase; SPTR: Probable type IV pilus assembly protein (TapB); TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: GSPII_E N-terminal domain; Type II/IV secretion system protein; Cycli [...]
 
 0.958
ADW19349.1
COGs: COG4972 Tfp pilus assembly protein ATPase PilM; InterPro IPR005883; KEGG: dps:DP0108 fimbrial assembly protein PilM; SPTR: Related to fimbrial assembly protein PilM; TIGRFAM: type IV pilus assembly protein PilM; PFAM: Competence protein A; Cell division protein FtsA; TIGRFAM: type IV pilus assembly protein PilM.
 
 
 
 0.945
ADW16542.1
InterPro IPR007831; KEGG: bts:Btus_3123 type II secretion system protein E; PFAM: General secretory system II protein E domain protein; SPTR: Type II secretion system protein E; PFAM: GSPII_E N-terminal domain.
 
 
 0.938
ADW16478.1
COGs: COG1989 Type II secretory pathway prepilin signal peptidase PulO and related peptidase; InterPro IPR014032: IPR010627: IPR000045; KEGG: dps:DP3017 type IV prepilin leader peptidase; PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; PRIAM: Prepilin peptidase; SPTR: Related to type IV prepilin leader peptidase; PFAM: Bacterial Peptidase A24 N-terminal domain; Type IV leader peptidase family.
 
  
 0.896
ADW19347.1
COGs: COG3167 Tfp pilus assembly protein PilO; KEGG: dps:DP0110 fimbrial assembly protein PilO; SPTR: Related to fimbrial assembly protein PilO; PFAM: Pilus assembly protein, PilO.
 
 
 
 0.869
ADW19348.1
COGs: COG3166 Tfp pilus assembly protein PilN; InterPro IPR007813; KEGG: dps:DP0109 fimbrial assembly protein PilN; PFAM: Fimbrial assembly family protein; SPTR: Related to fimbrial assembly protein PilN; PFAM: Fimbrial assembly protein (PilN).
 
 
 
 0.843
ADW19345.1
Secretin/TonB short domain protein; InterPro IPR011662: IPR013026; KEGG: dps:DP0112 fimbrial assembly protein PilQ [precursor]; PFAM: Secretin/TonB short domain; SPTR: Related to fimbrial assembly protein PilQ [Precursor]; PFAM: Secretin and TonB N terminus short domain; Localisation of periplasmic protein complexes.
 
 
 0.833
Your Current Organism:
Desulfobulbus propionicus
NCBI taxonomy Id: 577650
Other names: D. propionicus DSM 2032, Desulfobulbus propionicus DSM 2032, Desulfobulbus propionicus str. DSM 2032, Desulfobulbus propionicus strain DSM 2032
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