STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADW18498.1L-lysine 2,3-aminomutase; COGs: COG1509 Lysine 2 3-aminomutase; InterPro IPR007197: IPR003739; KEGG: dak:DaAHT2_1378 lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; PRIAM: Lysine 2,3-aminomutase; SPTR: Lysine 2,3-aminomutase YodO family protein; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Lysine-2,3-aminomutase; Radical SAM superfamily; TIGRFAM: KamA family protein. (373 aa)    
Predicted Functional Partners:
ADW19168.1
COGs: COG1748 Saccharopine dehydrogenase and related protein; InterPro IPR005097; KEGG: dba:Dbac_2320 saccharopine dehydrogenase; PFAM: Saccharopine dehydrogenase; SPTR: Saccharopine dehydrogenase; PFAM: Saccharopine dehydrogenase.
     
  0.900
ADW17849.1
MCP methyltransferase, CheR-type; COGs: COG1352 Methylase of chemotaxis methyl-accepting protein; InterPro IPR000780; KEGG: ppd:Ppro_1610 MCP methyltransferase, CheR-type; PFAM: MCP methyltransferase CheR-type; PRIAM: Protein-glutamate O-methyltransferase; SMART: MCP methyltransferase CheR-type; SPTR: MCP methyltransferase, CheR-type; PFAM: CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain.
    
   0.859
ADW17972.1
MCP methyltransferase, CheR-type; COGs: COG1352 Methylase of chemotaxis methyl-accepting protein; InterPro IPR000780; KEGG: dps:DP2645 chemotaxis protein methyltransferase CheR; PFAM: MCP methyltransferase CheR-type; PRIAM: Protein-glutamate O-methyltransferase; SMART: MCP methyltransferase CheR-type; SPTR: Related to chemotaxis protein methyltransferase CheR; PFAM: CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain.
    
   0.859
ADW18433.1
COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR000183: IPR002986; KEGG: rce:RC1_1016 diaminopimelate decarboxylase, putative; PFAM: Orn/DAP/Arg decarboxylase 2; PRIAM: Diaminopimelate decarboxylase; SPTR: Diaminopimelate decarboxylase; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain.
     
 0.800
ADW18467.1
COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR000183: IPR002986; KEGG: dps:DP2960 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; SPTR: Diaminopimelate decarboxylase; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; TIGRFAM: diaminopimelate decarboxylase.
     
 0.800
ADW18781.1
lysyl-tRNA synthetase-related protein GenX; COGs: COG2269 Truncated possibly inactive lysyl-tRNA synthetase (class II); InterPro IPR018149: IPR004525: IPR006195: IPR004364; KEGG: dak:DaAHT2_0266 tRNA synthetase class II (D K and N); PFAM: tRNA synthetase class II (D K and N); SPTR: tRNA synthetase class II (D K and N); TIGRFAM: lysyl-tRNA synthetase-related protein GenX; PFAM: tRNA synthetases class II (D, K and N); TIGRFAM: lysyl-tRNA synthetase-like protein GenX.
 
  
 0.768
nifJ
COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; InterProIPR011895: IPR017896: IPR017900: IPR002880: IPR 019752: IPR019456: IPR011766; KEGG: dak:DaAHT2_0906 pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; Pyruvate-flavodoxin oxidoreductase, EKR domain; thiamine pyrophosphate TPP-binding domain-containing protein; SPTR: Pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: pyruvate ferredoxin/flavod [...]
   
   0.738
ADW18499.1
Diguanylate cyclase; COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR000160: IPR013976; KEGG: dps:DP2205 hypothetical protein; PFAM: Metal-dependent hydrolase HDOD; GGDEF domain containing protein; SMART: GGDEF domain containing protein; SPTR: Putative uncharacterized protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain; HDOD domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
       0.490
Your Current Organism:
Desulfobulbus propionicus
NCBI taxonomy Id: 577650
Other names: D. propionicus DSM 2032, Desulfobulbus propionicus DSM 2032, Desulfobulbus propionicus str. DSM 2032, Desulfobulbus propionicus strain DSM 2032
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