STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADW18586.1Phage/conjugal plasmid C-4 type zinc finger protein, TraR family; InterPro IPR000962: IPR012783; KEGG: cvi:CV_2144 hypothetical protein; SPTR: Transcriptional regulator, TraR/DksA family; TIGRFAM: phage/conjugal plasmid C-4 type zinc finger protein, TraR family; PFAM: Prokaryotic dksA/traR C4-type zinc finger; TIGRFAM: phage/conjugal plasmid C-4 type zinc finger protein, TraR family. (69 aa)    
Predicted Functional Partners:
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.879
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.847
ADW18587.1
KEGG: dka:DKAM_0700 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.773
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
 
 0.709
ADW18581.1
Protein of unknown function DUF935; COGs: COG4383 Mu-like prophage protein gp29; InterPro IPR009279; KEGG: rsq:Rsph17025_2101 hypothetical protein; PFAM: protein of unknown function DUF935; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF935).
  
    0.708
ADW18579.1
Head morphogenesis protein SPP1 gp7; InterPro IPR006528; KEGG: sat:SYN_02302 Mu-like prophage FluMu F protein; PFAM: head morphogenesis protein SPP1 gp7; SPTR: Mu-like prophage Flumu F protein; PFAM: Phage Mu protein F like protein.
       0.703
ADW18582.1
Hypothetical protein; COGs: COG4373 Mu-like prophage FluMu protein gp28; InterPro IPR012036; KEGG: sfu:Sfum_1876 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Terminase-like family.
       0.703
ADW18588.1
Protein of unknown function DUF847; COGs: COG3926 Putative secretion activating protein; InterPro IPR008565: IPR018537; KEGG: dvm:DvMF_2867 protein of unknown function DUF847; PFAM: protein of unknown function DUF847; Peptidoglycan binding domain; SPTR: Putative uncharacterized protein; PFAM: Predicted Peptidoglycan domain; Predicted lysozyme (DUF847).
       0.694
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.675
ADW18585.1
KEGG: dal:Dalk_3560 hypothetical protein; SPTR: Putative uncharacterized protein.
  
    0.665
Your Current Organism:
Desulfobulbus propionicus
NCBI taxonomy Id: 577650
Other names: D. propionicus DSM 2032, Desulfobulbus propionicus DSM 2032, Desulfobulbus propionicus str. DSM 2032, Desulfobulbus propionicus strain DSM 2032
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.