STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADW18728.1tRNA/rRNA methyltransferase (SpoU); COGs: COG0565 rRNA methylase; InterPro IPR004384: IPR001537; KEGG: dak:DaAHT2_2609 RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); SPTR: RNA methyltransferase, TrmH family, group 1; PFAM: SpoU rRNA Methylase family; TIGRFAM: RNA methyltransferase, TrmH family, group 1. (264 aa)    
Predicted Functional Partners:
ADW18727.1
KEGG: dps:DP1907 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.728
ADW18525.1
RNase HII; COGs: COG0164 Ribonuclease HII; InterPro IPR001352; KEGG: dps:DP2806 ribonuclease HII; PFAM: ribonuclease HII/HIII; PRIAM: Ribonuclease H; SPTR: Ribonuclease HII; PFAM: Ribonuclease HII.
  
  
 0.553
ADW18427.1
COGs: COG0215 Cysteinyl-tRNA synthetase; InterPro IPR015803: IPR015273: IPR002308; KEGG: dak:DaAHT2_0595 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia; Cysteinyl-tRNA synthetase class Ia DALR; PRIAM: Cysteine--tRNA ligase; SPTR: Cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: tRNA synthetases class I (C) catalytic domain; DALR domain; TIGRFAM: cysteinyl-tRNA synthetase.
      0.550
ADW16848.1
COGs: COG0293 23S rRNA methylase; InterPro IPR002877: IPR016448; KEGG: dps:DP2909 ribosomal RNA methyltransferase (FtsJ); PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; SPTR: Ribosomal RNA large subunit methyltransferase E; PFAM: FtsJ-like methyltransferase; TIGRFAM: cell division protein FtsJ.
  
   
 0.549
ADW16282.1
Phosphoesterase RecJ domain protein; COGs: COG0618 Exopolyphosphatase-related protein; InterPro IPR001667; KEGG: dak:DaAHT2_1369 phosphoesterase RecJ domain protein; PFAM: phosphoesterase RecJ domain protein; SPTR: Phosphoesterase RecJ domain protein; PFAM: DHHA1 domain; DHH family.
  
     0.539
ADW18726.1
COGs: COG0557 Exoribonuclease R; InterProIPR011129: IPR011805: IPR004476: IPR003029: IPR 000771: IPR001900: IPR013223; KEGG: dak:DaAHT2_2608 ribonuclease R; PFAM: ribonuclease II; Ribonuclease B OB region domain; RNA binding S1 domain protein; SMART: Cold shock protein; SPTR: 3'-5' exoribonuclease, VacB and RNase II:Ribonuclease R; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonuclease; PFAM: Ribonuclease B OB domain; RNB domain; S1 RNA binding domain; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonucleases.
       0.498
ADW16670.1
MltA domain protein; COGs: COG2821 Membrane-bound lytic murein transglycosylase; InterPro IPR005300: IPR010611; KEGG: dal:Dalk_1595 MltA domain protein; PFAM: MltA domain protein; 3D domain-containing protein; SPTR: MltA domain protein; PFAM: MltA specific insert domain; 3D domain.
  
   
 0.489
ADW17339.1
Nicotinamidase; COGs: COG1335 Amidase related to nicotinamidase; InterPro IPR000868; KEGG: gur:Gura_1739 isochorismatase hydrolase; PFAM: isochorismatase hydrolase; PRIAM: Nicotinamidase; SPTR: Isochorismatase hydrolase; PFAM: Isochorismatase family.
 
      0.423
Your Current Organism:
Desulfobulbus propionicus
NCBI taxonomy Id: 577650
Other names: D. propionicus DSM 2032, Desulfobulbus propionicus DSM 2032, Desulfobulbus propionicus str. DSM 2032, Desulfobulbus propionicus strain DSM 2032
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