THITE_2113078 protein (Thermothielavioides terrestris)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

THITE_2113078

HTH La-type RNA-binding domain-containing protein. (1039 aa)

Predicted Functional Partners:

THITE_2110364

0.683

THITE_2106879

0.590

THITE_2124179

0.535

THITE_2111231

0.521

THITE_2119158

0.519

THITE_2114488

0.461

THITE_2120210

0.461

THITE_2119106

0.461

THITE_2044100

0.460

THITE_2027007

0.457

Your Current Organism:

Thermothielavioides terrestris

NCBI taxonomy Id: 578455
Other names: T. terrestris NRRL 8126, Thermothielavioides terrestris NRRL 8126

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
THITE_2027007	THITE_2113078	G2RGW1	G2R1K1	Uncharacterized protein.	HTH La-type RNA-binding domain-containing protein.	0.457
THITE_2027007	THITE_2114488	G2RGW1	G2R031	Uncharacterized protein.	Glycosyltransferase family 69 protein.	0.701
THITE_2027007	THITE_2119106	G2RGW1	G2RBC1	Uncharacterized protein.	Glycosyltransferase family 69 protein.	0.701
THITE_2027007	THITE_2120210	G2RGW1	G2R9U2	Uncharacterized protein.	MIF4G domain-containing protein.	0.701
THITE_2044100	THITE_2113078	G2QYN2	G2R1K1	Translation machinery-associated protein 22.	HTH La-type RNA-binding domain-containing protein.	0.460
THITE_2106879	THITE_2113078	G2QRX9	G2R1K1	PUA domain-containing protein.	HTH La-type RNA-binding domain-containing protein.	0.590
THITE_2106879	THITE_2119158	G2QRX9	G2RBF0	PUA domain-containing protein.	RRM domain-containing protein.	0.401
THITE_2106879	THITE_2124179	G2QRX9	G2RID4	PUA domain-containing protein.	Uncharacterized protein.	0.848
THITE_2110364	THITE_2113078	G2QSP1	G2R1K1	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	HTH La-type RNA-binding domain-containing protein.	0.683
THITE_2110364	THITE_2114488	G2QSP1	G2R031	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	Glycosyltransferase family 69 protein.	0.897
THITE_2110364	THITE_2119106	G2QSP1	G2RBC1	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	Glycosyltransferase family 69 protein.	0.897
THITE_2110364	THITE_2119158	G2QSP1	G2RBF0	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	RRM domain-containing protein.	0.885
THITE_2110364	THITE_2120210	G2QSP1	G2R9U2	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	MIF4G domain-containing protein.	0.897
THITE_2110364	THITE_2124179	G2QSP1	G2RID4	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	Uncharacterized protein.	0.498
THITE_2111231	THITE_2113078	G2R1E2	G2R1K1	Uncharacterized protein.	HTH La-type RNA-binding domain-containing protein.	0.521
THITE_2111231	THITE_2114488	G2R1E2	G2R031	Uncharacterized protein.	Glycosyltransferase family 69 protein.	0.645
THITE_2111231	THITE_2119106	G2R1E2	G2RBC1	Uncharacterized protein.	Glycosyltransferase family 69 protein.	0.645
THITE_2111231	THITE_2120210	G2R1E2	G2R9U2	Uncharacterized protein.	MIF4G domain-containing protein.	0.645
THITE_2111231	THITE_2124179	G2R1E2	G2RID4	Uncharacterized protein.	Uncharacterized protein.	0.955
THITE_2113078	THITE_2027007	G2R1K1	G2RGW1	HTH La-type RNA-binding domain-containing protein.	Uncharacterized protein.	0.457