D8PLF7_SCHCM protein (Schizophyllum commune)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D8PLF7_SCHCM

A to I editase domain-containing protein. (414 aa)

Predicted Functional Partners:

D8PST9_SCHCM

0.696

D8Q062_SCHCM

0.604

D8PLY6_SCHCM

0.563

D8PX07_SCHCM

0.461

D8Q2C6_SCHCM

0.461

D8QBE7_SCHCM

0.459

D8PQI6_SCHCM

0.457

D8Q978_SCHCM

0.456

D8PTB4_SCHCM

0.451

D8Q553_SCHCM

0.435

Your Current Organism:

Schizophyllum commune

NCBI taxonomy Id: 578458
Other names: S. commune H4-8, Schizophyllum commune H4-8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8PLF7_SCHCM	D8PLY6_SCHCM	D8PLF7	D8PLY6	A to I editase domain-containing protein.	CMP/dCMP-type deaminase domain-containing protein.	0.563
D8PLF7_SCHCM	D8PQI6_SCHCM	D8PLF7	D8PQI6	A to I editase domain-containing protein.	SAM-dependent MTase TRM10-type domain-containing protein.	0.457
D8PLF7_SCHCM	D8PST9_SCHCM	D8PLF7	D8PST9	A to I editase domain-containing protein.	Ubiquitin-conjugating enzyme 9; Belongs to the ubiquitin-conjugating enzyme family.	0.696
D8PLF7_SCHCM	D8PTB4_SCHCM	D8PLF7	D8PTB4	A to I editase domain-containing protein.	CMP/dCMP-type deaminase domain-containing protein.	0.451
D8PLF7_SCHCM	D8PX07_SCHCM	D8PLF7	D8PX07	A to I editase domain-containing protein.	Glutamine amidotransferase type-2 domain-containing protein.	0.461
D8PLF7_SCHCM	D8Q062_SCHCM	D8PLF7	D8Q062	A to I editase domain-containing protein.	SET domain-containing protein.	0.604
D8PLF7_SCHCM	D8Q2C6_SCHCM	D8PLF7	D8Q2C6	A to I editase domain-containing protein.	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.	0.461
D8PLF7_SCHCM	D8Q553_SCHCM	D8PLF7	D8Q553	A to I editase domain-containing protein.	DOC domain-containing protein.	0.435
D8PLF7_SCHCM	D8Q978_SCHCM	D8PLF7	D8Q978	A to I editase domain-containing protein.	UPF0020 domain-containing protein.	0.456
D8PLF7_SCHCM	D8QBE7_SCHCM	D8PLF7	D8QBE7	A to I editase domain-containing protein.	Lysine--tRNA ligase.	0.459
D8PLY6_SCHCM	D8PLF7_SCHCM	D8PLY6	D8PLF7	CMP/dCMP-type deaminase domain-containing protein.	A to I editase domain-containing protein.	0.563
D8PLY6_SCHCM	D8Q062_SCHCM	D8PLY6	D8Q062	CMP/dCMP-type deaminase domain-containing protein.	SET domain-containing protein.	0.991
D8PLY6_SCHCM	D8Q2C6_SCHCM	D8PLY6	D8Q2C6	CMP/dCMP-type deaminase domain-containing protein.	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.	0.625
D8PLY6_SCHCM	D8Q978_SCHCM	D8PLY6	D8Q978	CMP/dCMP-type deaminase domain-containing protein.	UPF0020 domain-containing protein.	0.402
D8PQI6_SCHCM	D8PLF7_SCHCM	D8PQI6	D8PLF7	SAM-dependent MTase TRM10-type domain-containing protein.	A to I editase domain-containing protein.	0.457
D8PQI6_SCHCM	D8Q978_SCHCM	D8PQI6	D8Q978	SAM-dependent MTase TRM10-type domain-containing protein.	UPF0020 domain-containing protein.	0.666
D8PST9_SCHCM	D8PLF7_SCHCM	D8PST9	D8PLF7	Ubiquitin-conjugating enzyme 9; Belongs to the ubiquitin-conjugating enzyme family.	A to I editase domain-containing protein.	0.696
D8PST9_SCHCM	D8PX07_SCHCM	D8PST9	D8PX07	Ubiquitin-conjugating enzyme 9; Belongs to the ubiquitin-conjugating enzyme family.	Glutamine amidotransferase type-2 domain-containing protein.	0.915
D8PST9_SCHCM	D8Q553_SCHCM	D8PST9	D8Q553	Ubiquitin-conjugating enzyme 9; Belongs to the ubiquitin-conjugating enzyme family.	DOC domain-containing protein.	0.485
D8PTB4_SCHCM	D8PLF7_SCHCM	D8PTB4	D8PLF7	CMP/dCMP-type deaminase domain-containing protein.	A to I editase domain-containing protein.	0.451