D8PWE8_SCHCM protein (Schizophyllum commune)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D8PWE8_SCHCM

PINc domain-containing protein. (1144 aa)

Predicted Functional Partners:

D8QD14_SCHCM

0.980

D8Q7T9_SCHCM

0.977

D8QLP8_SCHCM

0.803

D8Q0S0_SCHCM

0.788

D8PWT5_SCHCM

0.783

D8Q990_SCHCM

0.740

D8Q3P5_SCHCM

0.726

D8PKB7_SCHCM

0.689

D8PTB2_SCHCM

0.676

D8Q7P2_SCHCM

0.676

Your Current Organism:

Schizophyllum commune

NCBI taxonomy Id: 578458
Other names: S. commune H4-8, Schizophyllum commune H4-8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8PKB7_SCHCM	D8PTB2_SCHCM	D8PKB7	D8PTB2	RRM domain-containing protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.547
D8PKB7_SCHCM	D8PWE8_SCHCM	D8PKB7	D8PWE8	RRM domain-containing protein.	PINc domain-containing protein.	0.689
D8PKB7_SCHCM	D8PWT5_SCHCM	D8PKB7	D8PWT5	RRM domain-containing protein.	Nuclear cap-binding protein subunit 2.	0.729
D8PKB7_SCHCM	D8Q0S0_SCHCM	D8PKB7	D8Q0S0	RRM domain-containing protein.	RRM domain-containing protein.	0.988
D8PKB7_SCHCM	D8Q3P5_SCHCM	D8PKB7	D8Q3P5	RRM domain-containing protein.	Uncharacterized protein.	0.632
D8PKB7_SCHCM	D8Q7P2_SCHCM	D8PKB7	D8Q7P2	RRM domain-containing protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.547
D8PKB7_SCHCM	D8Q7T9_SCHCM	D8PKB7	D8Q7T9	RRM domain-containing protein.	Smg4_UPF3 domain-containing protein.	0.994
D8PKB7_SCHCM	D8Q990_SCHCM	D8PKB7	D8Q990	RRM domain-containing protein.	Uncharacterized protein.	0.997
D8PKB7_SCHCM	D8QD14_SCHCM	D8PKB7	D8QD14	RRM domain-containing protein.	Uncharacterized protein.	0.961
D8PKB7_SCHCM	D8QLP8_SCHCM	D8PKB7	D8QLP8	RRM domain-containing protein.	Uncharacterized protein.	0.768
D8PTB2_SCHCM	D8PKB7_SCHCM	D8PTB2	D8PKB7	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	RRM domain-containing protein.	0.547
D8PTB2_SCHCM	D8PWE8_SCHCM	D8PTB2	D8PWE8	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	PINc domain-containing protein.	0.676
D8PTB2_SCHCM	D8PWT5_SCHCM	D8PTB2	D8PWT5	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	Nuclear cap-binding protein subunit 2.	0.855
D8PTB2_SCHCM	D8Q0S0_SCHCM	D8PTB2	D8Q0S0	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	RRM domain-containing protein.	0.632
D8PTB2_SCHCM	D8Q3P5_SCHCM	D8PTB2	D8Q3P5	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	Uncharacterized protein.	0.573
D8PTB2_SCHCM	D8Q7P2_SCHCM	D8PTB2	D8Q7P2	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.901
D8PTB2_SCHCM	D8Q7T9_SCHCM	D8PTB2	D8Q7T9	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	Smg4_UPF3 domain-containing protein.	0.552
D8PTB2_SCHCM	D8Q990_SCHCM	D8PTB2	D8Q990	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	Uncharacterized protein.	0.485
D8PTB2_SCHCM	D8QD14_SCHCM	D8PTB2	D8QD14	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	Uncharacterized protein.	0.813
D8PTB2_SCHCM	D8QLP8_SCHCM	D8PTB2	D8QLP8	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	Uncharacterized protein.	0.818