STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D8PXQ8_SCHCMRRM domain-containing protein. (626 aa)    
Predicted Functional Partners:
D8PWT5_SCHCM
Nuclear cap-binding protein subunit 2.
    
 0.471
D8QLP8_SCHCM
Uncharacterized protein.
    
 0.465
D8PRP1_SCHCM
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
    
 0.457
D8PL45_SCHCM
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.441
D8PQC1_SCHCM
Ribosomal_L2_C domain-containing protein.
   
   0.431
D8QG19_SCHCM
Tr-type G domain-containing protein.
   
 0.429
D8PS48_SCHCM
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.425
D8PKE7_SCHCM
Sm domain-containing protein.
    
 0.415
D8PZM7_SCHCM
S1 motif domain-containing protein.
   
 0.402
Your Current Organism:
Schizophyllum commune
NCBI taxonomy Id: 578458
Other names: S. commune H4-8, Schizophyllum commune H4-8
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