D8Q3G1_SCHCM protein (Schizophyllum commune)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D8Q3G1_SCHCM

Uncharacterized protein; Belongs to the SKP1 family. (117 aa)

Predicted Functional Partners:

D8Q0F4_SCHCM

0.951

D8PPR8_SCHCM

0.950

D8Q844_SCHCM

0.950

D8Q1Y6_SCHCM

0.948

D8PNC7_SCHCM

0.886

D8PLE9_SCHCM

0.825

D8PRC1_SCHCM

0.825

D8Q9R5_SCHCM

0.825

D8QEN9_SCHCM

0.825

D8Q6A6_SCHCM

0.777

Your Current Organism:

Schizophyllum commune

NCBI taxonomy Id: 578458
Other names: S. commune H4-8, Schizophyllum commune H4-8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8PLE9_SCHCM	D8PNC7_SCHCM	D8PLE9	D8PNC7	Non-Catalytic module family EXPN protein.	Ubiquitin-like domain-containing protein.	0.901
D8PLE9_SCHCM	D8PPR8_SCHCM	D8PLE9	D8PPR8	Non-Catalytic module family EXPN protein.	Uncharacterized protein.	0.414
D8PLE9_SCHCM	D8Q3G1_SCHCM	D8PLE9	D8Q3G1	Non-Catalytic module family EXPN protein.	Uncharacterized protein; Belongs to the SKP1 family.	0.825
D8PLE9_SCHCM	D8Q844_SCHCM	D8PLE9	D8Q844	Non-Catalytic module family EXPN protein.	RING-type domain-containing protein.	0.897
D8PLE9_SCHCM	D8QEN9_SCHCM	D8PLE9	D8QEN9	Non-Catalytic module family EXPN protein.	MPN domain-containing protein.	0.518
D8PNC7_SCHCM	D8PLE9_SCHCM	D8PNC7	D8PLE9	Ubiquitin-like domain-containing protein.	Non-Catalytic module family EXPN protein.	0.901
D8PNC7_SCHCM	D8PRC1_SCHCM	D8PNC7	D8PRC1	Ubiquitin-like domain-containing protein.	Non-Catalytic module family EXPN protein.	0.901
D8PNC7_SCHCM	D8Q1Y6_SCHCM	D8PNC7	D8Q1Y6	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.436
D8PNC7_SCHCM	D8Q3G1_SCHCM	D8PNC7	D8Q3G1	Ubiquitin-like domain-containing protein.	Uncharacterized protein; Belongs to the SKP1 family.	0.886
D8PNC7_SCHCM	D8Q6A6_SCHCM	D8PNC7	D8Q6A6	Ubiquitin-like domain-containing protein.	PCI domain-containing protein.	0.971
D8PNC7_SCHCM	D8Q844_SCHCM	D8PNC7	D8Q844	Ubiquitin-like domain-containing protein.	RING-type domain-containing protein.	0.987
D8PNC7_SCHCM	D8Q9R5_SCHCM	D8PNC7	D8Q9R5	Ubiquitin-like domain-containing protein.	Non-Catalytic module family EXPN protein.	0.901
D8PNC7_SCHCM	D8QEN9_SCHCM	D8PNC7	D8QEN9	Ubiquitin-like domain-containing protein.	MPN domain-containing protein.	0.982
D8PPR8_SCHCM	D8PLE9_SCHCM	D8PPR8	D8PLE9	Uncharacterized protein.	Non-Catalytic module family EXPN protein.	0.414
D8PPR8_SCHCM	D8PRC1_SCHCM	D8PPR8	D8PRC1	Uncharacterized protein.	Non-Catalytic module family EXPN protein.	0.414
D8PPR8_SCHCM	D8Q0F4_SCHCM	D8PPR8	D8Q0F4	Uncharacterized protein.	Uncharacterized protein.	0.990
D8PPR8_SCHCM	D8Q3G1_SCHCM	D8PPR8	D8Q3G1	Uncharacterized protein.	Uncharacterized protein; Belongs to the SKP1 family.	0.950
D8PPR8_SCHCM	D8Q844_SCHCM	D8PPR8	D8Q844	Uncharacterized protein.	RING-type domain-containing protein.	0.571
D8PPR8_SCHCM	D8Q9R5_SCHCM	D8PPR8	D8Q9R5	Uncharacterized protein.	Non-Catalytic module family EXPN protein.	0.414
D8PRC1_SCHCM	D8PNC7_SCHCM	D8PRC1	D8PNC7	Non-Catalytic module family EXPN protein.	Ubiquitin-like domain-containing protein.	0.901