D8QB07_SCHCM protein (Schizophyllum commune)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D8QB07_SCHCM

G-patch domain-containing protein. (167 aa)

Predicted Functional Partners:

D8PZG5_SCHCM

0.956

D8Q7U8_SCHCM

0.956

D8PN65_SCHCM

0.953

D8QKX0_SCHCM

0.953

D8PLI5_SCHCM

0.952

D8PLW6_SCHCM

0.950

D8PQG0_SCHCM

0.950

D8PZU9_SCHCM

0.950

D8Q055_SCHCM

0.950

D8Q3X7_SCHCM

0.950

Your Current Organism:

Schizophyllum commune

NCBI taxonomy Id: 578458
Other names: S. commune H4-8, Schizophyllum commune H4-8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8PLI5_SCHCM	D8PLW6_SCHCM	D8PLI5	D8PLW6	Uncharacterized protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.999
D8PLI5_SCHCM	D8PN65_SCHCM	D8PLI5	D8PN65	Uncharacterized protein.	RNA helicase.	0.966
D8PLI5_SCHCM	D8PQG0_SCHCM	D8PLI5	D8PQG0	Uncharacterized protein.	Uncharacterized protein.	0.999
D8PLI5_SCHCM	D8PZG5_SCHCM	D8PLI5	D8PZG5	Uncharacterized protein.	Uncharacterized protein.	0.992
D8PLI5_SCHCM	D8PZU9_SCHCM	D8PLI5	D8PZU9	Uncharacterized protein.	Uncharacterized protein.	0.997
D8PLI5_SCHCM	D8Q055_SCHCM	D8PLI5	D8Q055	Uncharacterized protein.	Sas10 domain-containing protein.	0.999
D8PLI5_SCHCM	D8Q3X7_SCHCM	D8PLI5	D8Q3X7	Uncharacterized protein.	MI domain-containing protein.	0.617
D8PLI5_SCHCM	D8Q7U8_SCHCM	D8PLI5	D8Q7U8	Uncharacterized protein.	RNA helicase.	0.928
D8PLI5_SCHCM	D8QB07_SCHCM	D8PLI5	D8QB07	Uncharacterized protein.	G-patch domain-containing protein.	0.952
D8PLI5_SCHCM	D8QKX0_SCHCM	D8PLI5	D8QKX0	Uncharacterized protein.	U3 small nucleolar RNA-associated protein 22.	0.998
D8PLW6_SCHCM	D8PLI5_SCHCM	D8PLW6	D8PLI5	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Uncharacterized protein.	0.999
D8PLW6_SCHCM	D8PN65_SCHCM	D8PLW6	D8PN65	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	RNA helicase.	0.988
D8PLW6_SCHCM	D8PQG0_SCHCM	D8PLW6	D8PQG0	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Uncharacterized protein.	0.999
D8PLW6_SCHCM	D8PZG5_SCHCM	D8PLW6	D8PZG5	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Uncharacterized protein.	0.980
D8PLW6_SCHCM	D8PZU9_SCHCM	D8PLW6	D8PZU9	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Uncharacterized protein.	0.996
D8PLW6_SCHCM	D8Q055_SCHCM	D8PLW6	D8Q055	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Sas10 domain-containing protein.	0.999
D8PLW6_SCHCM	D8Q3X7_SCHCM	D8PLW6	D8Q3X7	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	MI domain-containing protein.	0.981
D8PLW6_SCHCM	D8Q7U8_SCHCM	D8PLW6	D8Q7U8	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	RNA helicase.	0.788
D8PLW6_SCHCM	D8QB07_SCHCM	D8PLW6	D8QB07	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	G-patch domain-containing protein.	0.950
D8PLW6_SCHCM	D8QKX0_SCHCM	D8PLW6	D8QKX0	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	U3 small nucleolar RNA-associated protein 22.	0.998