D8QIR8_SCHCM protein (Schizophyllum commune)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D8QIR8_SCHCM

Cytochrome b5 heme-binding domain-containing protein. (519 aa)

Predicted Functional Partners:

D8Q3T5_SCHCM

0.920

D8Q4J5_SCHCM

0.909

D8Q929_SCHCM

0.786

D8PN93_SCHCM

0.782

D8PZE9_SCHCM

0.773

D8QA96_SCHCM

0.767

D8PNI0_SCHCM

0.756

D8Q3A4_SCHCM

0.671

D8QF77_SCHCM

0.650

D8QF80_SCHCM

0.650

Your Current Organism:

Schizophyllum commune

NCBI taxonomy Id: 578458
Other names: S. commune H4-8, Schizophyllum commune H4-8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8PN93_SCHCM	D8PNI0_SCHCM	D8PN93	D8PNI0	Complex1_30kDa domain-containing protein; Belongs to the complex I 30 kDa subunit family.	Uncharacterized protein.	0.988
D8PN93_SCHCM	D8Q4J5_SCHCM	D8PN93	D8Q4J5	Complex1_30kDa domain-containing protein; Belongs to the complex I 30 kDa subunit family.	CIA30 domain-containing protein.	0.982
D8PN93_SCHCM	D8Q929_SCHCM	D8PN93	D8Q929	Complex1_30kDa domain-containing protein; Belongs to the complex I 30 kDa subunit family.	ETF domain-containing protein.	0.504
D8PN93_SCHCM	D8QF77_SCHCM	D8PN93	D8QF77	Complex1_30kDa domain-containing protein; Belongs to the complex I 30 kDa subunit family.	Complex1_49kDa domain-containing protein; Belongs to the complex I 49 kDa subunit family.	0.999
D8PN93_SCHCM	D8QF80_SCHCM	D8PN93	D8QF80	Complex1_30kDa domain-containing protein; Belongs to the complex I 30 kDa subunit family.	Complex1_49kDa domain-containing protein.	0.997
D8PN93_SCHCM	D8QIR8_SCHCM	D8PN93	D8QIR8	Complex1_30kDa domain-containing protein; Belongs to the complex I 30 kDa subunit family.	Cytochrome b5 heme-binding domain-containing protein.	0.782
D8PNI0_SCHCM	D8PN93_SCHCM	D8PNI0	D8PN93	Uncharacterized protein.	Complex1_30kDa domain-containing protein; Belongs to the complex I 30 kDa subunit family.	0.988
D8PNI0_SCHCM	D8Q4J5_SCHCM	D8PNI0	D8Q4J5	Uncharacterized protein.	CIA30 domain-containing protein.	0.989
D8PNI0_SCHCM	D8QF77_SCHCM	D8PNI0	D8QF77	Uncharacterized protein.	Complex1_49kDa domain-containing protein; Belongs to the complex I 49 kDa subunit family.	0.963
D8PNI0_SCHCM	D8QF80_SCHCM	D8PNI0	D8QF80	Uncharacterized protein.	Complex1_49kDa domain-containing protein.	0.963
D8PNI0_SCHCM	D8QIR8_SCHCM	D8PNI0	D8QIR8	Uncharacterized protein.	Cytochrome b5 heme-binding domain-containing protein.	0.756
D8PZE9_SCHCM	D8Q3A4_SCHCM	D8PZE9	D8Q3A4	ETF domain-containing protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.408
D8PZE9_SCHCM	D8Q3T5_SCHCM	D8PZE9	D8Q3T5	ETF domain-containing protein.	Uncharacterized protein.	0.690
D8PZE9_SCHCM	D8Q929_SCHCM	D8PZE9	D8Q929	ETF domain-containing protein.	ETF domain-containing protein.	0.999
D8PZE9_SCHCM	D8QA96_SCHCM	D8PZE9	D8QA96	ETF domain-containing protein.	Uncharacterized protein.	0.810
D8PZE9_SCHCM	D8QIR8_SCHCM	D8PZE9	D8QIR8	ETF domain-containing protein.	Cytochrome b5 heme-binding domain-containing protein.	0.773
D8Q3A4_SCHCM	D8PZE9_SCHCM	D8Q3A4	D8PZE9	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	ETF domain-containing protein.	0.408
D8Q3A4_SCHCM	D8Q3T5_SCHCM	D8Q3A4	D8Q3T5	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.993
D8Q3A4_SCHCM	D8Q929_SCHCM	D8Q3A4	D8Q929	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	ETF domain-containing protein.	0.560
D8Q3A4_SCHCM	D8QA96_SCHCM	D8Q3A4	D8QA96	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.854