A0A0P9EN48 protein (Rhodotorula graminis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0P9EN48

Uncharacterized protein. (575 aa)

Predicted Functional Partners:

A0A194S6G1

0.841

A0A194S6L1

0.841

A0A194S4D4

0.823

A0A194SBX7

0.794

A0A194S0A5

0.782

A0A194SDM2

0.760

A0A194S1S7

0.699

A0A0P9EIN8

0.684

A0A0P9IRV8

0.680

A0A194S404

0.645

Your Current Organism:

Rhodotorula graminis

NCBI taxonomy Id: 578459
Other names: R. graminis WP1, Rhodotorula graminis WP1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0P9EIN8	A0A0P9EN48	AAA_23 domain-containing protein.	Uncharacterized protein.	0.684
A0A0P9EIN8	A0A0P9IRV8	AAA_23 domain-containing protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.621
A0A0P9EIN8	A0A194S1S7	AAA_23 domain-containing protein.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.999
A0A0P9EIN8	A0A194S404	AAA_23 domain-containing protein.	Uncharacterized protein.	0.902
A0A0P9EN48	A0A0P9EIN8	Uncharacterized protein.	AAA_23 domain-containing protein.	0.684
A0A0P9EN48	A0A0P9IRV8	Uncharacterized protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.680
A0A0P9EN48	A0A194S0A5	Uncharacterized protein.	Tryptophan synthase.	0.782
A0A0P9EN48	A0A194S1S7	Uncharacterized protein.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.699
A0A0P9EN48	A0A194S404	Uncharacterized protein.	Uncharacterized protein.	0.645
A0A0P9EN48	A0A194S4D4	Uncharacterized protein.	Uncharacterized protein.	0.823
A0A0P9EN48	A0A194S6G1	Uncharacterized protein.	Uncharacterized protein.	0.841
A0A0P9EN48	A0A194S6L1	Uncharacterized protein.	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.	0.841
A0A0P9EN48	A0A194SBX7	Uncharacterized protein.	AB hydrolase-1 domain-containing protein.	0.794
A0A0P9EN48	A0A194SDM2	Uncharacterized protein.	Uncharacterized protein.	0.760
A0A0P9IRV8	A0A0P9EIN8	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	AAA_23 domain-containing protein.	0.621
A0A0P9IRV8	A0A0P9EN48	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Uncharacterized protein.	0.680
A0A0P9IRV8	A0A194S1S7	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.667
A0A0P9IRV8	A0A194S404	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Uncharacterized protein.	0.724
A0A0P9IRV8	A0A194S6G1	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Uncharacterized protein.	0.558
A0A0P9IRV8	A0A194S6L1	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.	0.558