A0A0P9FDZ8 protein (Rhodotorula graminis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0P9FDZ8

Autophagy_C domain-containing protein. (108 aa)

Predicted Functional Partners:

A0A0P9GH11

0.985

A0A0P9IV56

0.984

A0A0P9EI21

0.980

A0A0P9GWA4

0.966

A0A0P9F1X0

0.928

A0A194SB05

0.921

A0A194S743

0.908

A0A194SB37

0.830

A0A194SBF6

0.819

A0A194S2Y2

0.818

Your Current Organism:

Rhodotorula graminis

NCBI taxonomy Id: 578459
Other names: R. graminis WP1, Rhodotorula graminis WP1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0P9EI21	A0A0P9F1X0	Autophagy-related protein.	ATG16 domain-containing protein.	0.908
A0A0P9EI21	A0A0P9FDZ8	Autophagy-related protein.	Autophagy_C domain-containing protein.	0.980
A0A0P9EI21	A0A0P9GH11	Autophagy-related protein.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy.	0.942
A0A0P9EI21	A0A0P9GWA4	Autophagy-related protein.	Uncharacterized protein.	0.998
A0A0P9EI21	A0A0P9IV56	Autophagy-related protein.	Autophagy protein 5; Involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation.	0.929
A0A0P9EI21	A0A194S2Y2	Autophagy-related protein.	Uncharacterized protein.	0.919
A0A0P9EI21	A0A194S743	Autophagy-related protein.	Lipase_3 domain-containing protein.	0.973
A0A0P9EI21	A0A194SB05	Autophagy-related protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.996
A0A0P9EI21	A0A194SB37	Autophagy-related protein.	Uncharacterized protein.	0.887
A0A0P9EI21	A0A194SBF6	Autophagy-related protein.	UBA_e1_C domain-containing protein.	0.855
A0A0P9F1X0	A0A0P9EI21	ATG16 domain-containing protein.	Autophagy-related protein.	0.908
A0A0P9F1X0	A0A0P9FDZ8	ATG16 domain-containing protein.	Autophagy_C domain-containing protein.	0.928
A0A0P9F1X0	A0A0P9GH11	ATG16 domain-containing protein.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy.	0.993
A0A0P9F1X0	A0A0P9GWA4	ATG16 domain-containing protein.	Uncharacterized protein.	0.855
A0A0P9F1X0	A0A0P9IV56	ATG16 domain-containing protein.	Autophagy protein 5; Involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation.	0.997
A0A0P9F1X0	A0A194S2Y2	ATG16 domain-containing protein.	Uncharacterized protein.	0.985
A0A0P9F1X0	A0A194S743	ATG16 domain-containing protein.	Lipase_3 domain-containing protein.	0.961
A0A0P9F1X0	A0A194SB05	ATG16 domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.978
A0A0P9F1X0	A0A194SB37	ATG16 domain-containing protein.	Uncharacterized protein.	0.897
A0A0P9F1X0	A0A194SBF6	ATG16 domain-containing protein.	UBA_e1_C domain-containing protein.	0.641