A0A194S5Z6 protein (Rhodotorula graminis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A194S5Z6

WD_REPEATS_REGION domain-containing protein. (379 aa)

Predicted Functional Partners:

A0A0P9F0T8

0.994

A0A194S6L7

0.994

A0A194S827

0.990

A0A194S4X9

0.989

A0A0P9EWV9

0.988

A0A0P9EK76

0.987

A0A194S6R0

0.987

A0A194S9Z3

0.985

A0A194SE33

0.979

A0A0P9EKC5

0.975

Your Current Organism:

Rhodotorula graminis

NCBI taxonomy Id: 578459
Other names: R. graminis WP1, Rhodotorula graminis WP1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0P9EK76	A0A0P9EKC5	Uncharacterized protein.	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	0.998
A0A0P9EK76	A0A0P9EWV9	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.999
A0A0P9EK76	A0A0P9F0T8	Uncharacterized protein.	Uncharacterized protein.	0.986
A0A0P9EK76	A0A194S4X9	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.999
A0A0P9EK76	A0A194S5Z6	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.987
A0A0P9EK76	A0A194S6L7	Uncharacterized protein.	HORMA domain-containing protein.	0.981
A0A0P9EK76	A0A194S6R0	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.999
A0A0P9EK76	A0A194S827	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.894
A0A0P9EK76	A0A194S9Z3	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.998
A0A0P9EK76	A0A194SE33	Uncharacterized protein.	Uncharacterized protein.	0.736
A0A0P9EKC5	A0A0P9EK76	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	Uncharacterized protein.	0.998
A0A0P9EKC5	A0A0P9EWV9	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	TPR_REGION domain-containing protein.	0.998
A0A0P9EKC5	A0A0P9F0T8	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	Uncharacterized protein.	0.989
A0A0P9EKC5	A0A194S4X9	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	TPR_REGION domain-containing protein.	0.998
A0A0P9EKC5	A0A194S5Z6	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	WD_REPEATS_REGION domain-containing protein.	0.975
A0A0P9EKC5	A0A194S6L7	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	HORMA domain-containing protein.	0.991
A0A0P9EKC5	A0A194S6R0	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	TPR_REGION domain-containing protein.	0.998
A0A0P9EKC5	A0A194S827	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	WD_REPEATS_REGION domain-containing protein.	0.852
A0A0P9EKC5	A0A194S9Z3	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.998
A0A0P9EKC5	A0A194SE33	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	Uncharacterized protein.	0.736