A0A194S6L3 protein (Rhodotorula graminis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A194S6L3

Uncharacterized protein. (400 aa)

Predicted Functional Partners:

A0A194SD99

0.942

A0A0N8PZD9

0.772

A0A0P9EFA3

0.772

A0A194S419

0.772

A0A194S461

0.772

A0A194S6L5

0.772

A0A194S7I3

0.772

A0A0N8Q005

0.749

A0A194S0U3

0.744

A0A0P9EIH7

0.737

Your Current Organism:

Rhodotorula graminis

NCBI taxonomy Id: 578459
Other names: R. graminis WP1, Rhodotorula graminis WP1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0N8PZD9	A0A0P9EIH7	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	SH3 domain-containing protein.	0.480
A0A0N8PZD9	A0A194S0U3	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Uncharacterized protein.	0.418
A0A0N8PZD9	A0A194S461	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.703
A0A0N8PZD9	A0A194S6L3	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Uncharacterized protein.	0.772
A0A0N8PZD9	A0A194S7I3	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.704
A0A0N8Q005	A0A0P9EIH7	FYVE-type domain-containing protein.	SH3 domain-containing protein.	0.636
A0A0N8Q005	A0A194S0U3	FYVE-type domain-containing protein.	Uncharacterized protein.	0.999
A0A0N8Q005	A0A194S6L3	FYVE-type domain-containing protein.	Uncharacterized protein.	0.749
A0A0P9EFA3	A0A0P9EIH7	Uncharacterized protein.	SH3 domain-containing protein.	0.480
A0A0P9EFA3	A0A194S0U3	Uncharacterized protein.	Uncharacterized protein.	0.418
A0A0P9EFA3	A0A194S461	Uncharacterized protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.695
A0A0P9EFA3	A0A194S6L3	Uncharacterized protein.	Uncharacterized protein.	0.772
A0A0P9EFA3	A0A194S7I3	Uncharacterized protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.695
A0A0P9EIH7	A0A0N8PZD9	SH3 domain-containing protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.480
A0A0P9EIH7	A0A0N8Q005	SH3 domain-containing protein.	FYVE-type domain-containing protein.	0.636
A0A0P9EIH7	A0A0P9EFA3	SH3 domain-containing protein.	Uncharacterized protein.	0.480
A0A0P9EIH7	A0A194S0U3	SH3 domain-containing protein.	Uncharacterized protein.	0.644
A0A0P9EIH7	A0A194S419	SH3 domain-containing protein.	Uncharacterized protein.	0.485
A0A0P9EIH7	A0A194S461	SH3 domain-containing protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.481
A0A0P9EIH7	A0A194S6L3	SH3 domain-containing protein.	Uncharacterized protein.	0.737