STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A194SFU9Uncharacterized protein. (561 aa)    
Predicted Functional Partners:
A0A194SCH0
SLD3 domain-containing protein.
   
 0.944
A0A0P9EP27
Small nuclear ribonucleoprotein Sm D3.
    
 0.755
A0A0P9GHZ3
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
 0.754
A0A194SEN5
Small nuclear ribonucleoprotein Sm D2.
    
 0.754
A0A0N8PZ70
Sm domain-containing protein.
    
 0.751
A0A0P9ESS9
Uncharacterized protein.
    
  0.701
A0A0P9GXN8
Uncharacterized protein.
    
 0.686
A0A194SDE7
Uncharacterized protein.
    
 0.686
A0A194S797
G-patch domain-containing protein.
    
  0.648
A0A0N8Q003
Rho-GAP domain-containing protein.
    
 0.643
Your Current Organism:
Rhodotorula graminis
NCBI taxonomy Id: 578459
Other names: R. graminis WP1, Rhodotorula graminis WP1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.