AMAG_02123 protein (Allomyces macrogynus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AMAG_02123

SpoU_methylase domain-containing protein. (206 aa)

Predicted Functional Partners:

AMAG_06137

0.881

AMAG_04685

0.755

AMAG_03729

0.754

AMAG_06871

0.754

AMAG_00541

0.743

AMAG_02052

0.743

AMAG_04774

0.733

AMAG_03454

0.733

AMAG_11008

0.716

AMAG_11618

0.716

Your Current Organism:

Allomyces macrogynus

NCBI taxonomy Id: 578462
Other names: A. macrogynus ATCC 38327, Allomyces macrogynus ATCC 38327

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMAG_00541	AMAG_02123	A0A0L0RWU0	A0A0L0S1Q1	Uncharacterized protein.	SpoU_methylase domain-containing protein.	0.743
AMAG_00541	AMAG_03454	A0A0L0RWU0	A0A0L0S9P9	Uncharacterized protein.	G domain-containing protein.	0.969
AMAG_00541	AMAG_03729	A0A0L0RWU0	A0A0L0SAK9	Uncharacterized protein.	Iojap-like ribosome-associated protein.	0.960
AMAG_00541	AMAG_04685	A0A0L0RWU0	A0A0L0S5W0	Uncharacterized protein.	Ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	0.978
AMAG_00541	AMAG_04774	A0A0L0RWU0	A0A0L0S6E5	Uncharacterized protein.	G domain-containing protein.	0.969
AMAG_00541	AMAG_06137	A0A0L0RWU0	A0A0L0SP81	Uncharacterized protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.969
AMAG_00541	AMAG_06871	A0A0L0RWU0	A0A0L0SFH3	Uncharacterized protein.	Iojap-like ribosome-associated protein.	0.960
AMAG_00541	AMAG_11008	A0A0L0RWU0	A0A0L0SSK9	Uncharacterized protein.	tRNA modification GTPase TrmE; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	0.883
AMAG_00541	AMAG_11618	A0A0L0RWU0	A0A0L0SVU0	Uncharacterized protein.	Small GTP-binding protein domain.	0.883
AMAG_02052	AMAG_02123	A0A0L0S0Y9	A0A0L0S1Q1	Uncharacterized protein.	SpoU_methylase domain-containing protein.	0.743
AMAG_02052	AMAG_03454	A0A0L0S0Y9	A0A0L0S9P9	Uncharacterized protein.	G domain-containing protein.	0.969
AMAG_02052	AMAG_03729	A0A0L0S0Y9	A0A0L0SAK9	Uncharacterized protein.	Iojap-like ribosome-associated protein.	0.960
AMAG_02052	AMAG_04685	A0A0L0S0Y9	A0A0L0S5W0	Uncharacterized protein.	Ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	0.978
AMAG_02052	AMAG_04774	A0A0L0S0Y9	A0A0L0S6E5	Uncharacterized protein.	G domain-containing protein.	0.969
AMAG_02052	AMAG_06137	A0A0L0S0Y9	A0A0L0SP81	Uncharacterized protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.969
AMAG_02052	AMAG_06871	A0A0L0S0Y9	A0A0L0SFH3	Uncharacterized protein.	Iojap-like ribosome-associated protein.	0.960
AMAG_02052	AMAG_11008	A0A0L0S0Y9	A0A0L0SSK9	Uncharacterized protein.	tRNA modification GTPase TrmE; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	0.883
AMAG_02052	AMAG_11618	A0A0L0S0Y9	A0A0L0SVU0	Uncharacterized protein.	Small GTP-binding protein domain.	0.883
AMAG_02123	AMAG_00541	A0A0L0S1Q1	A0A0L0RWU0	SpoU_methylase domain-containing protein.	Uncharacterized protein.	0.743
AMAG_02123	AMAG_02052	A0A0L0S1Q1	A0A0L0S0Y9	SpoU_methylase domain-containing protein.	Uncharacterized protein.	0.743