AMAG_02385 protein (Allomyces macrogynus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AMAG_02385

DUF2431 domain-containing protein. (303 aa)

Predicted Functional Partners:

AMAG_07526

0.751

AMAG_20577

0.751

AMAG_08655

0.659

AMAG_10084

0.659

AMAG_01665

0.558

AMAG_04160

0.558

AMAG_03225

0.537

AMAG_14268

0.508

AMAG_15880

0.508

AMAG_04963

0.505

Your Current Organism:

Allomyces macrogynus

NCBI taxonomy Id: 578462
Other names: A. macrogynus ATCC 38327, Allomyces macrogynus ATCC 38327

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMAG_01665	AMAG_02385	A0A0L0S052	A0A0L0S2G8	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	DUF2431 domain-containing protein.	0.558
AMAG_01665	AMAG_03225	A0A0L0S052	A0A0L0S4U0	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	RRM domain-containing protein.	0.997
AMAG_01665	AMAG_08655	A0A0L0S052	A0A0L0SMD9	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family.	0.835
AMAG_01665	AMAG_10084	A0A0L0S052	A0A0L0SQU8	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family.	0.835
AMAG_02385	AMAG_01665	A0A0L0S2G8	A0A0L0S052	DUF2431 domain-containing protein.	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.558
AMAG_02385	AMAG_03225	A0A0L0S2G8	A0A0L0S4U0	DUF2431 domain-containing protein.	RRM domain-containing protein.	0.537
AMAG_02385	AMAG_04160	A0A0L0S2G8	A0A0L0S854	DUF2431 domain-containing protein.	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.558
AMAG_02385	AMAG_04963	A0A0L0S2G8	A0A0L0S6C3	DUF2431 domain-containing protein.	Anthranilate synthase component I.	0.505
AMAG_02385	AMAG_07526	A0A0L0S2G8	A0A0L0SIL7	DUF2431 domain-containing protein.	Alpha-1,3-glucosyltransferase; Belongs to the ALG6/ALG8 glucosyltransferase family.	0.751
AMAG_02385	AMAG_08655	A0A0L0S2G8	A0A0L0SMD9	DUF2431 domain-containing protein.	Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family.	0.659
AMAG_02385	AMAG_10084	A0A0L0S2G8	A0A0L0SQU8	DUF2431 domain-containing protein.	Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family.	0.659
AMAG_02385	AMAG_14268	A0A0L0S2G8	A0A0L0T4I0	DUF2431 domain-containing protein.	Uncharacterized protein.	0.508
AMAG_02385	AMAG_15880	A0A0L0S2G8	A0A0L0T930	DUF2431 domain-containing protein.	Uncharacterized protein.	0.508
AMAG_02385	AMAG_20577	A0A0L0S2G8	A0A0L0TD10	DUF2431 domain-containing protein.	Alpha-1,3-glucosyltransferase; Belongs to the ALG6/ALG8 glucosyltransferase family.	0.751
AMAG_03225	AMAG_01665	A0A0L0S4U0	A0A0L0S052	RRM domain-containing protein.	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.997
AMAG_03225	AMAG_02385	A0A0L0S4U0	A0A0L0S2G8	RRM domain-containing protein.	DUF2431 domain-containing protein.	0.537
AMAG_03225	AMAG_04160	A0A0L0S4U0	A0A0L0S854	RRM domain-containing protein.	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.997
AMAG_03225	AMAG_08655	A0A0L0S4U0	A0A0L0SMD9	RRM domain-containing protein.	Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family.	0.927
AMAG_03225	AMAG_10084	A0A0L0S4U0	A0A0L0SQU8	RRM domain-containing protein.	Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family.	0.927
AMAG_03225	AMAG_14268	A0A0L0S4U0	A0A0L0T4I0	RRM domain-containing protein.	Uncharacterized protein.	0.660