STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMAG_02785RBR-type E3 ubiquitin transferase. (515 aa)    
Predicted Functional Partners:
AMAG_04595
E3 ubiquitin-protein ligase RBX1.
    
 0.960
AMAG_00695
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 0.959
AMAG_03780
Ubiquitin-40S ribosomal protein S27a.
    
 0.942
AMAG_11168
Ubiquitin-60S ribosomal protein L40.
    
 0.942
AMAG_00897
NEDD8.
    
 0.890
AMAG_02401
NEDD8.
    
 0.890
AMAG_13298
RRN7-type domain-containing protein.
    
  0.878
AMAG_16845
Uncharacterized protein.
    
  0.878
AMAG_02810
W2 domain-containing protein.
 
      0.873
AMAG_04306
Ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.811
Your Current Organism:
Allomyces macrogynus
NCBI taxonomy Id: 578462
Other names: A. macrogynus ATCC 38327, Allomyces macrogynus ATCC 38327
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.